RSA-tools - peak-motifs result

Analysis: random-genome_fragments-siGATA_template (08/10/2014 08:48)

Input files
motif_db_jaspar_core_vertebrates /vh/rsat/rsat/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf
test_seq /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/peak-motifspeak_seq
Directories
output /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/
oligos_6nt_mkv4_m1 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_6nt_mkv4_m1/
oligos_6nt_mkv4_m2 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_6nt_mkv4_m2/
oligos_6nt_mkv4_m3 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_6nt_mkv4_m3/
oligos_6nt_mkv4_m4 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_6nt_mkv4_m4/
oligos_6nt_mkv4_m5 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_6nt_mkv4_m5/
positions_6nt /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/positions_6nt/
oligos_7nt_mkv5_m1 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_7nt_mkv5_m1/
oligos_7nt_mkv5_m2 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_7nt_mkv5_m2/
oligos_7nt_mkv5_m3 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_7nt_mkv5_m3/
oligos_7nt_mkv5_m4 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_7nt_mkv5_m4/
oligos_7nt_mkv5_m5 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/oligos_7nt_mkv5_m5/
positions_7nt_m1 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/positions_7nt_m1/
positions_7nt_m2 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/positions_7nt_m2/
dyads_m1 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/
dyads_m2 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/
dyads_m3 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/
dyads_m4 /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m4/
Output files
1nt_test_freq /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
1nt_test_heatmap /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
1nt_test_inclusive /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
1nt_test_profiles /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
1nt_test_profiles_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
1nt_test_profiles_index /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_test_transitions /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
2nt_test_freq /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
2nt_test_heatmap /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
2nt_test_inclusive /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
2nt_test_profiles /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
2nt_test_profiles_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
2nt_test_profiles_index /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_test_transitions /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
archive /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/peak-motifs_archive.zip
dyads /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
dyads_2pssm /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_log.txt
dyads_asmb /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
dyads_m1_logo /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_logo.png
dyads_m1_logo_rc /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_logo_rc.png
dyads_m1_pssm_enrichment /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_scan_mkv1_enrichment.tab
dyads_m1_pssm_enrichment_png /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_scan_mkv1_enrichment.png
dyads_m1_pssm_site_distrib /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_site_distrib.tab
dyads_m1_pssm_site_distrib_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_site_distrib.png
dyads_m1_pssm_sites /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites.tab
dyads_m1_pssm_sites_per_peak /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites_per_peak.tab
dyads_m1_pssm_sites_per_peak_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites_per_peak.png
dyads_m1_tab /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tab
dyads_m1_tf /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf
dyads_m1_vs_db_jaspar_core_vertebrates /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_jaspar_core_vertebrates.tab
dyads_m1_vs_db_jaspar_core_vertebrates_html /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_jaspar_core_vertebrates.html
dyads_m1_vs_ref /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_ref.tab
dyads_m1_vs_ref_html /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_ref.html
dyads_m2_logo /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_logo.png
dyads_m2_logo_rc /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_logo_rc.png
dyads_m2_pssm_enrichment /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_scan_mkv1_enrichment.tab
dyads_m2_pssm_enrichment_png /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_scan_mkv1_enrichment.png
dyads_m2_pssm_site_distrib /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_site_distrib.tab
dyads_m2_pssm_site_distrib_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_site_distrib.png
dyads_m2_pssm_sites /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites.tab
dyads_m2_pssm_sites_per_peak /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites_per_peak.tab
dyads_m2_pssm_sites_per_peak_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites_per_peak.png
dyads_m2_tab /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tab
dyads_m2_tf /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf
dyads_m2_vs_db_jaspar_core_vertebrates /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_jaspar_core_vertebrates.tab
dyads_m2_vs_db_jaspar_core_vertebrates_html /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_jaspar_core_vertebrates.html
dyads_m2_vs_ref /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_ref.tab
dyads_m2_vs_ref_html /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_ref.html
dyads_m3_logo /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_logo.png
dyads_m3_logo_rc /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_logo_rc.png
dyads_m3_pssm_enrichment /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_scan_mkv1_enrichment.tab
dyads_m3_pssm_enrichment_png /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_scan_mkv1_enrichment.png
dyads_m3_pssm_site_distrib /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_site_distrib.tab
dyads_m3_pssm_site_distrib_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_site_distrib.png
dyads_m3_pssm_sites /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_sites.tab
dyads_m3_pssm_sites_per_peak /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_sites_per_peak.tab
dyads_m3_pssm_sites_per_peak_graph /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_sites_per_peak.png
dyads_m3_tab /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tab
dyads_m3_tf /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf
dyads_m3_vs_db_jaspar_core_vertebrates /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_jaspar_core_vertebrates.tab
dyads_m3_vs_db_jaspar_core_vertebrates_html /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_jaspar_core_vertebrates.html
dyads_m3_vs_ref /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_ref.tab
dyads_m3_vs_ref_html /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_ref.html
dyads_m4_logo /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_logo.png
dyads_m4_logo_rc /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_logo_rc.png
dyads_m4_pssm_enrichment /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_scan_mkv1_enrichment.tab
dyads_m4_pssm_enrichment_png /vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_scan_mkv1_enrichment.png
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