; convert-matrix  -v 1 -i $RSAT/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	/vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/vh/rsat/rsat/public_html/tmp/apache/2014/10/08/peak-motifs.2014-10-08.083939_2014-10-08.083939_hIGyA6/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	6	3	5	0	2	0	0	0	18	1	0	0	2	1	4	5
c	13	11	0	19	22	23	24	25	24	3	3	24	21	22	25	8	8
g	6	5	23	0	2	1	2	1	2	3	22	1	2	1	0	10	9
t	5	4	0	2	2	0	0	0	0	2	0	1	3	1	0	4	4
//
a	26	26	2	86	4	1	2	7	1	92	1	2	0	1	67	32	30
c	11	11	4	3	0	0	2	0	3	1	2	0	0	1	2	7	9
g	7	12	1	6	0	2	0	4	0	1	1	0	2	2	3	16	17
t	54	49	91	3	94	95	94	87	94	4	94	96	96	94	26	43	42
//
a	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
c	0	2	3	3	1	3	0	0	3	3	0	2	3	3	0	3	3	0	1	3	1
g	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	0	0
t	2	0	0	0	2	0	2	0	0	0	3	1	0	0	3	0	0	3	0	0	2
//
a	1	1	2	0	1	1	2	1	0	1	14	0	0	2	1	3	5
c	11	8	2	18	16	15	16	18	19	17	0	18	19	17	18	6	7
g	4	3	13	1	2	2	0	0	0	1	5	0	0	0	0	6	5
t	3	7	2	0	0	1	1	0	0	0	0	1	0	0	0	4	2
//
; Host name	biow
; Job started	2014-10-08.084223
; Job done	2014-10-08.084223
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0
;	csystem	0