peak-motifs siGATA_ER_E2

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

wmATGTCAbc

GVTGACATKW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmATGTCAbc

NFE2L1::MafG MA0089.1 R 6 0.6000 0.904 0.543 ....GTCAkw GTCATS

Pax2 MA0067.1 D 7 0.6364 0.798 0.508 ...TGTCAkw wgTCAyk.

RORA_1 MA0071.1 D 8 0.6667 0.754 0.503 waATGTCA.. ..cwAGGTCA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1313 (18.65%)
Max nb of predicted sites per peak: 8
(hg19_chr7_151406452_151406671_+)
Mean nb of predicted sites per peak: 1.17

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

ssCGCCCGss

SSCGGGCGSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCCGss

E2F1 MA0024.2 R 8 0.6154 0.840 0.517 ssCGCCCG.. ...SSCGCSCS

TFAP2A MA0003.1 D 7 0.5833 0.769 0.448 ...GCCCGss GCCcbrr..

E2F4 MA0470.1 R 7 0.5000 0.833 0.417 ssCGCCC... ....CCCGCSC

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 413 (5.87%)
Max nb of predicted sites per peak: 28
(hg19_chr7_140372612_140372961_+)
Mean nb of predicted sites per peak: 3.68

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

wsAGACCAgm

KCTGGTCTSW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsAGACCAgm

YY1 MA0095.1 D 6 0.6000 0.751 0.451 ....ACCAgm rCCATc

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 464 (6.59%)
Max nb of predicted sites per peak: 3
(hg19_chr7_69245272_69245790_+)
Mean nb of predicted sites per peak: 1.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

svAGGTCAGsg

CSCTGACCTBS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svAGGTCAGsg

RORA_1 MA0071.1 D 8 0.6154 0.977 0.601 cvAGGTCA... ..cwAGGTCA

Rxra MA0512.1 D 10 0.8333 0.887 0.739 cvAGGTCAGs. .ArAGKTCAgd

ESR2 MA0258.2 D 9 0.5294 0.923 0.489 ..AGGTCAGsg rGGTCAsms......

Total maches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 821 (11.66%)
Max nb of predicted sites per peak: 6
(hg19_chr7_157413722_157414180_+)
Mean nb of predicted sites per peak: 1.11

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

ssGCTCTGCss

SSGCAGAGCSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCTCTGCss

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 651 (9.25%)
Max nb of predicted sites per peak: 11
(hg19_chr7_140372612_140372961_+)
Mean nb of predicted sites per peak: 1.31

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

syCCAGGTCACasa

TSTGTGACCTGGRS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syCCAGGTCACasa

Esrrb MA0141.1 D 10 0.6250 0.889 0.555 byCCAGGTCA.... ..syCAAGGTCA

ESR2 MA0258.2 D 10 0.5263 0.907 0.477 ....AGGTCACasw rGGTCAsmst.....

RORA_1 MA0071.1 D 10 0.7143 0.877 0.627 byCCAGGTCA.... wwcwAGGTCA

Total maches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 539 (7.66%)
Max nb of predicted sites per peak: 2
(hg19_chr7_85554022_85554540_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

rsCaTGACCTGGss

SSCCAGGTCATGSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsCaTGACCTGGss

NFE2L1::MafG MA0089.1 D 6 0.4286 0.948 0.406 ..CATGAC...... sATGAC

RORA_1 MA0071.1 R 10 0.7143 0.867 0.619 ....TGACCTGGbc TGACCTWGWW

ESR2 MA0258.2 R 10 0.5263 0.853 0.449 acCATGACCT.... .....ASKSTGACCY

Total maches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 548 (7.78%)
Max nb of predicted sites per peak: 3
(hg19_chr7_158349412_158349551_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

hwttaAaTtTTTTAAAAAAttAgw

WCTAATTTTTTAAAAAATTTAAWD

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hwttaAaTtTTTTAAAAAAttAgw

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 311 (4.42%)
Max nb of predicted sites per peak: 6
(hg19_chr7_90667502_90667690_+)
Mean nb of predicted sites per peak: 1.43

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

sbyaaCCTGACCTGgsy

RSCCAGGTCAGGTTRVS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbyaaCCTGACCTGgsy

RORA_1 MA0071.1 R 10 0.5882 0.857 0.504 .......TGACCTGgsy TGACCTWGWW

ESR2 MA0258.2 R 13 0.6842 0.803 0.550 styaaCCTGACCT.... ..GTCASKSTGACCY

Esrrb MA0141.1 R 10 0.5263 0.822 0.432 .......TGACCTGgsy TGACCTTGRS..

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 406 (5.77%)
Max nb of predicted sites per peak: 6
(hg19_chr7_157413722_157414180_+)
Mean nb of predicted sites per peak: 1.09

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

wwAATGTCATGwy

RWCATGACATTWW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAATGTCATGwy

NFE2L1::MafG MA0089.1 R 6 0.4615 0.948 0.437 .....GTCATG.. GTCATS

Pax2 MA0067.1 D 8 0.6154 0.789 0.486 ....TGTCATGw. wgTCAykb

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 429 (6.09%)
Max nb of predicted sites per peak: 3
(hg19_chr7_55266612_55266850_+)
Mean nb of predicted sites per peak: 1.08

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

svCCACACCcg

CGGGTGTGGBS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svCCACACCcg

Klf1 MA0493.1 D 11 1.0000 0.898 0.898 cvCCACACCcg rrCCACACCCw

ZNF354C MA0130.1 D 6 0.5455 0.923 0.504 cvCCAC..... mTCCAC

Klf4 MA0039.2 R 10 0.9091 0.848 0.770 .vCCACACCcg GCCMCRCCCW

Total maches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 600 (8.52%)
Max nb of predicted sites per peak: 4
(hg19_chr7_2727692_2727991_+)
Mean nb of predicted sites per peak: 1.15

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

rrTGACTCAbc

GVTGAGTCAYY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrTGACTCAbc

FOSL2 MA0478.1 D 10 0.8333 0.954 0.795 rrTGACTCAb. .rrTGAsTCAb

FOSL1 MA0477.1 D 11 1.0000 0.943 0.943 rrTGACTCAbm rrTGAsTCAks

JUNB MA0490.1 D 10 0.8333 0.949 0.791 rrTGACTCAb. .rrTGAsTCAk

Total maches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 725 (10.30%)
Max nb of predicted sites per peak: 3
(hg19_chr7_94141002_94141471_+)
Mean nb of predicted sites per peak: 1.07

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

wtATTTTTAww

WWTAAAAATAW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wtATTTTTAww

CDX2 MA0465.1 R 7 0.4667 0.864 0.403 ....TTTTAww TTTTATK....

MEF2C MA0497.1 R 11 0.7333 0.803 0.589 wtATTTTTAww ..CTATTTTTRGM..

MEF2A MA0052.2 R 11 0.7333 0.792 0.581 wtATTTTTAww ...CTATTTTTRGM.

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 501 (7.12%)
Max nb of predicted sites per peak: 4
(hg19_chr7_80904422_80904641_+)
Mean nb of predicted sites per peak: 1.08

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

gsCCTCAGGsm

KSCCTGAGGSC

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsCCTCAGGsm

TFAP2C MA0524.1 D 11 0.7333 0.902 0.661 rsCCTCAGGsm ...dsCCyCAGGsc.

TFAP2A MA0003.2 D 11 0.7333 0.864 0.634 rsCCTCAGGsm ...wGCCysAGGsC.

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 732 (10.40%)
Max nb of predicted sites per peak: 6
(hg19_chr7_56032452_56032951_+)
Mean nb of predicted sites per peak: 1.11

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

ssCCCCTCCcs

SGGGAGGGGSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCCCCTCCcs

SP1 MA0079.3 D 10 0.8333 0.883 0.735 .kCCCCTCCcs gCCCCkCCCC.

SP1 MA0079.2 D 9 0.7500 0.905 0.679 ..CCCCTCCcs CCCCkCCCC.

KLF5 MA0599.1 D 10 0.9091 0.857 0.779 .kCCCCTCCcs gCCMCrCCCh

Total maches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 742 (10.54%)
Max nb of predicted sites per peak: 12
(hg19_chr7_140372612_140372961_+)
Mean nb of predicted sites per peak: 1.61

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

syCCAGGTCACCtks

SMAGGTGACCTGGRS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syCCAGGTCACCtks

ESR1 MA0112.1 D 13 0.6500 0.869 0.565 ..CCAGGTCACCtkg ccAGGTCaCcrtG.....

ESR2 MA0258.2 D 11 0.5789 0.887 0.513 ....AGGTCACCtkg rGGTCAsmstG....

RORA_1 MA0071.1 D 10 0.6667 0.832 0.555 byCCAGGTCA..... wwcwAGGTCA

Total maches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 511 (7.26%)
Max nb of predicted sites per peak: 5
(hg19_chr7_157413722_157414180_+)
Mean nb of predicted sites per peak: 1.09

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

byCAAGGTCACCtkg

CMAGGTGACCTTGRV

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor byCAAGGTCACCtkg

Esrrb MA0141.1 D 10 0.5882 0.987 0.581 byCAAGGTCA..... ..syCAAGGTCA

ESRRA MA0592.1 D 11 0.7333 0.949 0.696 .yCAAGGTCACC... yCAAGGTCAcm

Esrrb MA0141.2 D 10 0.5882 0.987 0.580 byCAAGGTCA..... ..syCAAGGTCA

Total maches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 484 (6.87%)
Max nb of predicted sites per peak: 3
(hg19_chr7_4722872_4723501_+)
Mean nb of predicted sites per peak: 1.10

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

smCCAGGTCATGcyg

CRGCATGACCTGGKS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smCCAGGTCATGcyg

RORA_1 MA0071.1 D 10 0.6667 0.845 0.564 smCCAGGTCA..... wwcwAGGTCA

Esrrb MA0141.1 D 10 0.5882 0.837 0.492 smCCAGGTCA..... ..syCAAGGTCA

Esrrb MA0141.2 D 10 0.5882 0.836 0.492 smCCAGGTCA..... ..syCAAGGTCA

Total maches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 463 (6.58%)
Max nb of predicted sites per peak: 3
(hg19_chr7_158349412_158349551_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

ssCCAGGTCAGGgcg

CGCCCTGACCTGGSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCCAGGTCAGGgcg

RORA_1 MA0071.1 D 10 0.6667 0.825 0.550 ssCCAGGTCA..... wwcwAGGTCA

ESR2 MA0258.2 D 11 0.5789 0.816 0.473 ....AGGTCAGGgcr rGGTCAsmstG....

Esrrb MA0141.1 D 10 0.5882 0.824 0.485 ssCCAGGTCA..... ..syCAAGGTCA

Total maches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 543 (7.71%)
Max nb of predicted sites per peak: 6
(hg19_chr7_157413722_157414180_+)
Mean nb of predicted sites per peak: 1.16

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

kbCCAGGTCAAGgy

RCCTTGACCTGGVM

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kbCCAGGTCAAGgy

RORA_1 MA0071.1 D 10 0.7143 0.848 0.606 kbCCAGGTCA.... wwcwAGGTCA

Esrrb MA0141.1 D 10 0.6250 0.847 0.529 kbCCAGGTCA.... ..syCAAGGTCA

Esrrb MA0141.2 D 10 0.6250 0.846 0.529 kbCCAGGTCA.... ..syCAAGGTCA

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 417 (5.92%)
Max nb of predicted sites per peak: 3
(hg19_chr7_158349412_158349551_+)
Mean nb of predicted sites per peak: 1.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 dyads_m1

swGTAAATATTTACws

SWGTAAATATTTACWS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor swGTAAATATTTACws

Foxa2 MA0047.2 R 9 0.4737 0.858 0.406 bwGTAAATA....... ...RWGTAAAYA

Foxa2 MA0047.1 D 12 0.7500 0.791 0.593 ....AAATATTTACwv mawTrTTkryTY

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 389 (5.52%)
Max nb of predicted sites per peak: 6
(hg19_chr7_108815662_108815950_+)
Mean nb of predicted sites per peak: 2.06

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 dyads_m2

arCAAATATTTACwy

RWGTAAATATTTGYT

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor arCAAATATTTACwy

Foxa2 MA0047.2 D 9 0.5000 0.860 0.430 ......TATTTACwt TRTTTACwy...

Foxa2 MA0047.1 D 12 0.8000 0.791 0.633 ...AAATATTTACwt mawTrTTkryTY

FOXA1 MA0148.1 D 9 0.5294 0.787 0.416 ......TATTTACwt TGTTTrCwy..

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 657 (9.33%)
Max nb of predicted sites per peak: 4
(hg19_chr7_7154402_7154801_+)
Mean nb of predicted sites per peak: 1.44

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 dyads_m3

ssGCCCAGGGCASGGGGsg

CSCCCCSTGCCCTGGGCSS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCCCAGGGCASGGGGsg

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 515 (7.31%)
Max nb of predicted sites per peak: 25
(hg19_chr7_130790442_130790741_+)
Mean nb of predicted sites per peak: 2.30

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 dyads_m4

scAAGGTCACCsk

MSGGTGACCTTGS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scAAGGTCACCsk

RORA_1 MA0071.1 D 9 0.6429 0.936 0.601 cyAAGGTCA.... .wcwAGGTCA

Esrrb MA0141.2 D 9 0.5625 0.968 0.545 cyAAGGTCA.... ...yCAAGGTCA

Esrrb MA0141.1 D 9 0.5625 0.968 0.545 cyAAGGTCA.... ...yCAAGGTCA

Total maches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 304 (4.32%)
Max nb of predicted sites per peak: 2
(hg19_chr7_690302_690520_+)
Mean nb of predicted sites per peak: 1.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 dyads_m5

CkSCSCSRSSCCYGGGCsv

BSGCCCRGGSSYSGSGSMG

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CkSCSCSRSSCCYGGGCsv

Total maches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 556 (7.90%)
Max nb of predicted sites per peak: 31
(hg19_chr7_140372612_140372961_+)
Mean nb of predicted sites per peak: 2.82

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus jaspar_core_vertebrates database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSA-tools - peak-motifs result

Analysis: siGATA_ER_E2_r3 (07/10/2014 09:44)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsAGACCAgm

YY1 MA0095.1 D 6 0.6000 0.751 0.451 ....ACCAgm rCCATc

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCTCTGCss

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hwttaAaTtTTTTAAAAAAttAgw

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCCCAGGGCASGGGGsg

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CkSCSCSRSSCCYGGGCsv

Total maches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSA-tools - peak-motifs result

Analysis: siGATA_ER_E2_r3 (07/10/2014 09:44)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wsAGACCAgm YY1 MA0095.1 D 6 0.6000 0.751 0.451 ....ACCAgm rCCATc Total maches= 1

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssGCTCTGCss Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor hwttaAaTtTTTTAAAAAAttAgw Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwAATGTCATGwy NFE2L1::MafG MA0089.1 R 6 0.4615 0.948 0.437 .....GTCATG.. GTCATS Pax2 MA0067.1 D 8 0.6154 0.789 0.486 ....TGTCATGw. wgTCAykb Total maches= 2

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssGCCCAGGGCASGGGGsg Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor CkSCSCSRSSCCYGGGCsv Total maches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsAGACCAgm

YY1 MA0095.1 D 6 0.6000 0.751 0.451 ....ACCAgm rCCATc

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCTCTGCss

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hwttaAaTtTTTTAAAAAAttAgw

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCCCAGGGCASGGGGsg

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor CkSCSCSRSSCCYGGGCsv

Total maches= 0