; convert-matrix  -v 1 -i $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices.txt
; Input files
;	input	/vh/rsat/rsat/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/vh/rsat/rsat/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	107	133	3	1	463	1	450	0	1	83	110
c	184	124	487	482	4	491	3	495	482	223	112
g	120	154	5	9	25	1	42	0	12	75	152
t	84	84	0	3	3	2	0	0	0	114	121
//
a	236	279	0	2	812	0	0	2	805	92	215
c	164	183	4	1	0	812	0	812	1	220	217
g	229	255	0	811	2	2	2	0	8	245	181
t	185	97	810	0	0	0	812	0	0	257	201
//
a	185	133	557	0	6	5	7	1	557	196	213
c	88	130	0	0	0	1	1	0	0	95	90
g	103	105	0	0	2	1	1	0	0	81	94
t	181	189	0	557	549	550	548	556	0	185	160
//
a	195	115	1	0	1	0	700	0	0	114	214
c	160	206	746	744	1	748	20	10	2	274	219
g	237	283	1	5	20	1	29	739	746	239	151
t	157	145	1	0	727	0	0	0	1	122	165
//
a	122	95	1	1	0	0	4	3	0	98	91
c	288	176	725	680	704	718	1	734	731	306	278
g	175	277	12	55	36	20	102	2	10	158	233
t	156	193	3	5	1	3	634	2	0	179	139
//
; Host name	biow
; Job started	2014-10-07.093149
; Job done	2014-10-07.093149
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0
;	csystem	0