One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_jaspar_core_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift9 ; 18 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_6nt_mkv4_m4_shift9 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=11; shift=9; ncol=20; ---------cvAGGTCAGsg ; Alignment reference a 0 0 0 0 0 0 0 0 0 226 281 963 0 0 0 0 961 15 236 236 c 0 0 0 0 0 0 0 0 0 281 294 9 10 0 1 977 3 93 253 211 g 0 0 0 0 0 0 0 0 0 231 275 4 967 977 1 0 12 821 340 327 t 0 0 0 0 0 0 0 0 0 239 127 1 0 0 975 0 1 48 148 203

MA0071.1_shift7 (RORA_1) 0.977 0.601 10.345 0.606 0.960 0.206 0.987 1 4 2 4 1 1 1 2.000 1
; oligos_6nt_mkv4_m4 versus MA0071.1 (RORA_1); m=1/17; ncol2=10; w=8; offset=-2; strand=D; shift=7; score= 2; -------wwcwAGGTCA--- ; cor=0.977; Ncor=0.601; logoDP=10.345; NIcor=0.606; NsEucl=0.960; SSD=0.206; NSW=0.987; rcor=1; rNcor=4; rlogoDP=2; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.000; match_rank=1 a 0 0 0 0 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 c 0 0 0 0 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 g 0 0 0 0 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 t 0 0 0 0 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0

MA0512.1_shift8 (Rxra) 0.887 0.739 8.345 0.734 0.927 1.060 0.947 5 1 8 1 4 5 6 4.286 2
; oligos_6nt_mkv4_m4 versus MA0512.1 (Rxra); m=2/17; ncol2=11; w=10; offset=-1; strand=D; shift=8; score= 4.2857; --------CArAGKTCAgd- ; cor=0.887; Ncor=0.739; logoDP=8.345; NIcor=0.734; NsEucl=0.927; SSD=1.060; NSW=0.947; rcor=5; rNcor=1; rlogoDP=8; rNIcor=1; rNsEucl=4; rSSD=5; rNSW=6; rank_mean=4.286; match_rank=2 a 0 0 0 0 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0 c 0 0 0 0 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0 g 0 0 0 0 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0 t 0 0 0 0 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0

MA0258.2_shift11 (ESR2) 0.923 0.489 7.461 0.484 0.932 0.759 0.958 2 8 11 7 3 2 2 5.000 3
; oligos_6nt_mkv4_m4 versus MA0258.2 (ESR2); m=3/17; ncol2=15; w=9; offset=2; strand=D; shift=11; score= 5; -----------rGGTCAsms ; cor=0.923; Ncor=0.489; logoDP=7.461; NIcor=0.484; NsEucl=0.932; SSD=0.759; NSW=0.958; rcor=2; rNcor=8; rlogoDP=11; rNIcor=7; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=3 a 0 0 0 0 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 c 0 0 0 0 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 g 0 0 0 0 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 t 0 0 0 0 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752

MA0141.1_shift5 (Esrrb) 0.910 0.485 8.828 0.476 0.919 0.839 0.948 3 9 6 9 6 3 4 5.714 4
; oligos_6nt_mkv4_m4 versus MA0141.1 (Esrrb); m=4/17; ncol2=12; w=8; offset=-4; strand=D; shift=5; score= 5.7143; -----rgsyCAAGGTCA--- ; cor=0.910; Ncor=0.485; logoDP=8.828; NIcor=0.476; NsEucl=0.919; SSD=0.839; NSW=0.948; rcor=3; rNcor=9; rlogoDP=6; rNIcor=9; rNsEucl=6; rSSD=3; rNSW=4; rank_mean=5.714; match_rank=4 a 0 0 0 0 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0 c 0 0 0 0 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0 g 0 0 0 0 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0 t 0 0 0 0 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0

MA0258.1_shift9 (ESR2) 0.885 0.541 6.407 0.539 0.932 1.105 0.950 6 6 14 5 2 6 3 6.000 5
; oligos_6nt_mkv4_m4 versus MA0258.1 (ESR2); m=5/17; ncol2=18; w=11; offset=0; strand=D; shift=9; score= 6; ---------cwrGGTCAsgk ; cor=0.885; Ncor=0.541; logoDP=6.407; NIcor=0.539; NsEucl=0.932; SSD=1.105; NSW=0.950; rcor=6; rNcor=6; rlogoDP=14; rNIcor=5; rNsEucl=2; rSSD=6; rNSW=3; rank_mean=6.000; match_rank=5 a 0 0 0 0 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52 c 0 0 0 0 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61 g 0 0 0 0 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147 t 0 0 0 0 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97

MA0141.2_shift5 (Esrrb) 0.910 0.485 8.936 0.475 0.919 0.845 0.947 4 10 5 10 7 4 5 6.429 6
; oligos_6nt_mkv4_m4 versus MA0141.2 (Esrrb); m=6/17; ncol2=12; w=8; offset=-4; strand=D; shift=5; score= 6.4286; -----rgsyCAAGGTCA--- ; cor=0.910; Ncor=0.485; logoDP=8.936; NIcor=0.475; NsEucl=0.919; SSD=0.845; NSW=0.947; rcor=4; rNcor=10; rlogoDP=5; rNIcor=10; rNsEucl=7; rSSD=4; rNSW=5; rank_mean=6.429; match_rank=6 a 0 0 0 0 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 c 0 0 0 0 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 g 0 0 0 0 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 t 0 0 0 0 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0

MA0592.1_shift8 (ESRRA) 0.833 0.695 9.293 0.672 0.908 1.696 0.915 10 2 4 2 9 11 9 6.714 7
; oligos_6nt_mkv4_m4 versus MA0592.1 (ESRRA); m=7/17; ncol2=11; w=10; offset=-1; strand=D; shift=8; score= 6.7143; --------yCAAGGTCAcm- ; cor=0.833; Ncor=0.695; logoDP=9.293; NIcor=0.672; NsEucl=0.908; SSD=1.696; NSW=0.915; rcor=10; rNcor=2; rlogoDP=4; rNIcor=2; rNsEucl=9; rSSD=11; rNSW=9; rank_mean=6.714; match_rank=7 a 0 0 0 0 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 c 0 0 0 0 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 g 0 0 0 0 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 t 0 0 0 0 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0

MA0160.1_shift10 (NR4A2) 0.870 0.633 7.532 0.627 0.903 1.194 0.925 7 3 10 3 12 7 8 7.143 8
; oligos_6nt_mkv4_m4 versus MA0160.1 (NR4A2); m=8/17; ncol2=8; w=8; offset=1; strand=D; shift=10; score= 7.1429; ----------aAGGTCAc-- ; cor=0.870; Ncor=0.633; logoDP=7.532; NIcor=0.627; NsEucl=0.903; SSD=1.194; NSW=0.925; rcor=7; rNcor=3; rlogoDP=10; rNIcor=3; rNsEucl=12; rSSD=7; rNSW=8; rank_mean=7.143; match_rank=8 a 0 0 0 0 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 g 0 0 0 0 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 t 0 0 0 0 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0

MA0112.2_shift6 (ESR1) 0.840 0.462 4.366 0.459 0.922 1.484 0.933 8 13 16 13 5 9 7 10.143 9
; oligos_6nt_mkv4_m4 versus MA0112.2 (ESR1); m=9/17; ncol2=20; w=11; offset=-3; strand=D; shift=6; score=10.1429; ------vkscmaGGtCAccc ; cor=0.840; Ncor=0.462; logoDP=4.366; NIcor=0.459; NsEucl=0.922; SSD=1.484; NSW=0.933; rcor=8; rNcor=13; rlogoDP=16; rNIcor=13; rNsEucl=5; rSSD=9; rNSW=7; rank_mean=10.143; match_rank=9 a 0 0 0 0 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 c 0 0 0 0 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 g 0 0 0 0 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 t 0 0 0 0 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56

MA0072.1_shift4 (RORA_2) 0.835 0.469 10.206 0.465 0.899 1.640 0.909 9 12 3 12 15 10 11 10.286 10
; oligos_6nt_mkv4_m4 versus MA0072.1 (RORA_2); m=10/17; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=10.2857; ----wwwAwbTAGGTCAr-- ; cor=0.835; Ncor=0.469; logoDP=10.206; NIcor=0.465; NsEucl=0.899; SSD=1.640; NSW=0.909; rcor=9; rNcor=12; rlogoDP=3; rNIcor=12; rNsEucl=15; rSSD=10; rNSW=11; rank_mean=10.286; match_rank=10 a 0 0 0 0 9 17 15 35 23 2 0 28 0 0 0 0 36 15 0 0 c 0 0 0 0 8 2 0 1 0 12 0 0 0 0 0 36 0 6 0 0 g 0 0 0 0 8 7 3 0 0 13 0 8 36 36 0 0 0 10 0 0 t 0 0 0 0 11 10 18 0 13 9 36 0 0 0 36 0 0 5 0 0

MA0112.1_shift9 (ESR1) 0.793 0.485 6.878 0.482 0.912 1.870 0.915 12 11 12 8 8 12 10 10.429 11
; oligos_6nt_mkv4_m4 versus MA0112.1 (ESR1); m=11/17; ncol2=18; w=11; offset=0; strand=D; shift=9; score=10.4286; ---------ccAGGTCaCcr ; cor=0.793; Ncor=0.485; logoDP=6.878; NIcor=0.482; NsEucl=0.912; SSD=1.870; NSW=0.915; rcor=12; rNcor=11; rlogoDP=12; rNIcor=8; rNsEucl=8; rSSD=12; rNSW=10; rank_mean=10.429; match_rank=11 a 0 0 0 0 0 0 0 0 0 1 1 7 2 0 0 0 6 1 2 3 c 0 0 0 0 0 0 0 0 0 5 5 1 0 0 0 7 0 7 5 2 g 0 0 0 0 0 0 0 0 0 1 1 1 7 9 0 2 2 1 1 4 t 0 0 0 0 0 0 0 0 0 2 2 0 0 0 9 0 1 0 1 0

MA0505.1_shift4 (Nr5a2) 0.805 0.503 7.773 0.467 0.902 1.915 0.904 11 7 9 11 14 13 13 11.143 12
; oligos_6nt_mkv4_m4 versus MA0505.1 (Nr5a2); m=12/17; ncol2=15; w=10; offset=-5; strand=D; shift=4; score=11.1429; ----ragtTCAAGGyCAgs- ; cor=0.805; Ncor=0.503; logoDP=7.773; NIcor=0.467; NsEucl=0.902; SSD=1.915; NSW=0.904; rcor=11; rNcor=7; rlogoDP=9; rNIcor=11; rNsEucl=14; rSSD=13; rNSW=13; rank_mean=11.143; match_rank=12 a 0 0 0 0 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 c 0 0 0 0 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 g 0 0 0 0 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 t 0 0 0 0 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0

MA0504.1_shift9 (NR2C2) 0.771 0.565 5.902 0.534 0.906 2.135 0.903 16 5 15 6 11 15 14 11.714 13
; oligos_6nt_mkv4_m4 versus MA0504.1 (NR2C2); m=13/17; ncol2=15; w=11; offset=0; strand=D; shift=9; score=11.7143; ---------mgrGGTCArAG ; cor=0.771; Ncor=0.565; logoDP=5.902; NIcor=0.534; NsEucl=0.906; SSD=2.135; NSW=0.903; rcor=16; rNcor=5; rlogoDP=15; rNIcor=6; rNsEucl=11; rSSD=15; rNSW=14; rank_mean=11.714; match_rank=13 a 0 0 0 0 0 0 0 0 0 129 82 193 0 10 3 6 343 187 324 10 c 0 0 0 0 0 0 0 0 0 126 70 6 8 3 0 309 0 0 0 0 g 0 0 0 0 0 0 0 0 0 90 221 195 366 355 79 54 48 208 71 385 t 0 0 0 0 0 0 0 0 0 50 22 1 21 27 313 26 4 0 0 0

MA0066.1_shift9 (PPARG) 0.776 0.427 6.761 0.428 0.908 2.052 0.907 15 16 13 14 10 14 12 13.429 14
; oligos_6nt_mkv4_m4 versus MA0066.1 (PPARG); m=14/17; ncol2=20; w=11; offset=0; strand=D; shift=9; score=13.4286; ---------sTrGGTCAcsg ; cor=0.776; Ncor=0.427; logoDP=6.761; NIcor=0.428; NsEucl=0.908; SSD=2.052; NSW=0.907; rcor=15; rNcor=16; rlogoDP=13; rNIcor=14; rNsEucl=10; rSSD=14; rNSW=12; rank_mean=13.429; match_rank=14 a 0 0 0 0 0 0 0 0 0 3 3 19 0 1 0 2 26 5 5 4 c 0 0 0 0 0 0 0 0 0 8 0 0 1 0 1 23 1 15 7 2 g 0 0 0 0 0 0 0 0 0 14 0 9 27 26 4 3 0 4 10 18 t 0 0 0 0 0 0 0 0 0 3 25 0 0 1 23 0 1 4 6 4

MA0065.1_shift0 (PPARG::RXRA) 0.778 0.428 8.775 0.416 0.902 2.316 0.895 14 15 7 16 13 16 15 13.714 15
; oligos_6nt_mkv4_m4 versus MA0065.1 (PPARG::RXRA); m=15/17; ncol2=20; w=11; offset=-9; strand=D; shift=0; score=13.7143; yywrrGGTCAAAGGTCAymk ; cor=0.778; Ncor=0.428; logoDP=8.775; NIcor=0.416; NsEucl=0.902; SSD=2.316; NSW=0.895; rcor=14; rNcor=15; rlogoDP=7; rNIcor=16; rNsEucl=13; rSSD=16; rNSW=15; rank_mean=13.714; match_rank=15 a 10 7 19 13 17 0 0 0 2 41 41 39 0 0 0 2 38 10 13 7 c 12 13 4 1 0 0 0 2 37 0 0 0 0 0 2 36 1 12 15 10 g 7 8 6 27 24 41 39 0 2 0 0 2 41 39 0 1 2 4 9 12 t 12 13 12 0 0 0 2 39 0 0 0 0 0 2 39 2 0 15 4 12

MA0115.1_shift2 (NR1H2::RXRA) 0.762 0.424 11.168 0.418 0.882 2.804 0.860 17 17 1 15 16 17 17 14.286 16
; oligos_6nt_mkv4_m4 versus MA0115.1 (NR1H2::RXRA); m=16/17; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=14.2857; --AAAGGTCAAAGGTCAAc- ; cor=0.762; Ncor=0.424; logoDP=11.168; NIcor=0.418; NsEucl=0.882; SSD=2.804; NSW=0.860; rcor=17; rNcor=17; rlogoDP=1; rNIcor=15; rNsEucl=16; rSSD=17; rNSW=17; rank_mean=14.286; match_rank=16 a 0 0 17 17 20 0 0 0 0 25 24 25 0 0 0 0 25 20 0 0 c 0 0 5 1 0 0 0 0 25 0 0 0 0 0 0 25 0 1 15 0 g 0 0 0 5 5 25 24 0 0 0 0 0 25 25 0 0 0 2 6 0 t 0 0 3 2 0 0 1 25 0 0 1 0 0 0 25 0 0 2 4 0

MA0089.1_rc_shift13 (NFE2L1::MafG_rc) 0.791 0.431 0.095 -0.131 0.862 1.362 0.887 13 14 17 17 17 8 16 14.571 17
; oligos_6nt_mkv4_m4 versus MA0089.1_rc (NFE2L1::MafG_rc); m=17/17; ncol2=6; w=6; offset=4; strand=R; shift=13; score=14.5714; -------------GTCATs- ; cor=0.791; Ncor=0.431; logoDP=0.095; NIcor=-0.131; NsEucl=0.862; SSD=1.362; NSW=0.887; rcor=13; rNcor=14; rlogoDP=17; rNIcor=17; rNsEucl=17; rSSD=8; rNSW=16; rank_mean=14.571; match_rank=17 a 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 1 34 0 6 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 32 0 3 10 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0 2 11 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 1 0 29 7 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_6nt_mkv4_m4_shift9 (oligos_6nt_mkv4_m4)																	; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=11; shift=9; ncol=20; ---------cvAGGTCAGsg ; Alignment reference a 0 0 0 0 0 0 0 0 0 226 281 963 0 0 0 0 961 15 236 236 c 0 0 0 0 0 0 0 0 0 281 294 9 10 0 1 977 3 93 253 211 g 0 0 0 0 0 0 0 0 0 231 275 4 967 977 1 0 12 821 340 327 t 0 0 0 0 0 0 0 0 0 239 127 1 0 0 975 0 1 48 148 203
MA0071.1_shift7 (RORA_1)	0.977	0.601	10.345	0.606	0.960	0.206	0.987	1	4	2	4	1	1	1	2.000	1	; oligos_6nt_mkv4_m4 versus MA0071.1 (RORA_1); m=1/17; ncol2=10; w=8; offset=-2; strand=D; shift=7; score= 2; -------wwcwAGGTCA--- ; cor=0.977; Ncor=0.601; logoDP=10.345; NIcor=0.606; NsEucl=0.960; SSD=0.206; NSW=0.987; rcor=1; rNcor=4; rlogoDP=2; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.000; match_rank=1 a 0 0 0 0 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 c 0 0 0 0 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 g 0 0 0 0 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 t 0 0 0 0 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0
MA0512.1_shift8 (Rxra)	0.887	0.739	8.345	0.734	0.927	1.060	0.947	5	1	8	1	4	5	6	4.286	2	; oligos_6nt_mkv4_m4 versus MA0512.1 (Rxra); m=2/17; ncol2=11; w=10; offset=-1; strand=D; shift=8; score= 4.2857; --------CArAGKTCAgd- ; cor=0.887; Ncor=0.739; logoDP=8.345; NIcor=0.734; NsEucl=0.927; SSD=1.060; NSW=0.947; rcor=5; rNcor=1; rlogoDP=8; rNIcor=1; rNsEucl=4; rSSD=5; rNSW=6; rank_mean=4.286; match_rank=2 a 0 0 0 0 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0 c 0 0 0 0 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0 g 0 0 0 0 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0 t 0 0 0 0 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0
MA0258.2_shift11 (ESR2)	0.923	0.489	7.461	0.484	0.932	0.759	0.958	2	8	11	7	3	2	2	5.000	3	; oligos_6nt_mkv4_m4 versus MA0258.2 (ESR2); m=3/17; ncol2=15; w=9; offset=2; strand=D; shift=11; score= 5; -----------rGGTCAsms ; cor=0.923; Ncor=0.489; logoDP=7.461; NIcor=0.484; NsEucl=0.932; SSD=0.759; NSW=0.958; rcor=2; rNcor=8; rlogoDP=11; rNIcor=7; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=3 a 0 0 0 0 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 c 0 0 0 0 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 g 0 0 0 0 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 t 0 0 0 0 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752
MA0141.1_shift5 (Esrrb)	0.910	0.485	8.828	0.476	0.919	0.839	0.948	3	9	6	9	6	3	4	5.714	4	; oligos_6nt_mkv4_m4 versus MA0141.1 (Esrrb); m=4/17; ncol2=12; w=8; offset=-4; strand=D; shift=5; score= 5.7143; -----rgsyCAAGGTCA--- ; cor=0.910; Ncor=0.485; logoDP=8.828; NIcor=0.476; NsEucl=0.919; SSD=0.839; NSW=0.948; rcor=3; rNcor=9; rlogoDP=6; rNIcor=9; rNsEucl=6; rSSD=3; rNSW=4; rank_mean=5.714; match_rank=4 a 0 0 0 0 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0 c 0 0 0 0 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0 g 0 0 0 0 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0 t 0 0 0 0 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0
MA0258.1_shift9 (ESR2)	0.885	0.541	6.407	0.539	0.932	1.105	0.950	6	6	14	5	2	6	3	6.000	5	; oligos_6nt_mkv4_m4 versus MA0258.1 (ESR2); m=5/17; ncol2=18; w=11; offset=0; strand=D; shift=9; score= 6; ---------cwrGGTCAsgk ; cor=0.885; Ncor=0.541; logoDP=6.407; NIcor=0.539; NsEucl=0.932; SSD=1.105; NSW=0.950; rcor=6; rNcor=6; rlogoDP=14; rNIcor=5; rNsEucl=2; rSSD=6; rNSW=3; rank_mean=6.000; match_rank=5 a 0 0 0 0 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52 c 0 0 0 0 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61 g 0 0 0 0 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147 t 0 0 0 0 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97
MA0141.2_shift5 (Esrrb)	0.910	0.485	8.936	0.475	0.919	0.845	0.947	4	10	5	10	7	4	5	6.429	6	; oligos_6nt_mkv4_m4 versus MA0141.2 (Esrrb); m=6/17; ncol2=12; w=8; offset=-4; strand=D; shift=5; score= 6.4286; -----rgsyCAAGGTCA--- ; cor=0.910; Ncor=0.485; logoDP=8.936; NIcor=0.475; NsEucl=0.919; SSD=0.845; NSW=0.947; rcor=4; rNcor=10; rlogoDP=5; rNIcor=10; rNsEucl=7; rSSD=4; rNSW=5; rank_mean=6.429; match_rank=6 a 0 0 0 0 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 c 0 0 0 0 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 g 0 0 0 0 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 t 0 0 0 0 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0
MA0592.1_shift8 (ESRRA)	0.833	0.695	9.293	0.672	0.908	1.696	0.915	10	2	4	2	9	11	9	6.714	7	; oligos_6nt_mkv4_m4 versus MA0592.1 (ESRRA); m=7/17; ncol2=11; w=10; offset=-1; strand=D; shift=8; score= 6.7143; --------yCAAGGTCAcm- ; cor=0.833; Ncor=0.695; logoDP=9.293; NIcor=0.672; NsEucl=0.908; SSD=1.696; NSW=0.915; rcor=10; rNcor=2; rlogoDP=4; rNIcor=2; rNsEucl=9; rSSD=11; rNSW=9; rank_mean=6.714; match_rank=7 a 0 0 0 0 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 c 0 0 0 0 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 g 0 0 0 0 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 t 0 0 0 0 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0
MA0160.1_shift10 (NR4A2)	0.870	0.633	7.532	0.627	0.903	1.194	0.925	7	3	10	3	12	7	8	7.143	8	; oligos_6nt_mkv4_m4 versus MA0160.1 (NR4A2); m=8/17; ncol2=8; w=8; offset=1; strand=D; shift=10; score= 7.1429; ----------aAGGTCAc-- ; cor=0.870; Ncor=0.633; logoDP=7.532; NIcor=0.627; NsEucl=0.903; SSD=1.194; NSW=0.925; rcor=7; rNcor=3; rlogoDP=10; rNIcor=3; rNsEucl=12; rSSD=7; rNSW=8; rank_mean=7.143; match_rank=8 a 0 0 0 0 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 g 0 0 0 0 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 t 0 0 0 0 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0
MA0112.2_shift6 (ESR1)	0.840	0.462	4.366	0.459	0.922	1.484	0.933	8	13	16	13	5	9	7	10.143	9	; oligos_6nt_mkv4_m4 versus MA0112.2 (ESR1); m=9/17; ncol2=20; w=11; offset=-3; strand=D; shift=6; score=10.1429; ------vkscmaGGtCAccc ; cor=0.840; Ncor=0.462; logoDP=4.366; NIcor=0.459; NsEucl=0.922; SSD=1.484; NSW=0.933; rcor=8; rNcor=13; rlogoDP=16; rNIcor=13; rNsEucl=5; rSSD=9; rNSW=7; rank_mean=10.143; match_rank=9 a 0 0 0 0 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 c 0 0 0 0 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 g 0 0 0 0 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 t 0 0 0 0 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56
MA0072.1_shift4 (RORA_2)	0.835	0.469	10.206	0.465	0.899	1.640	0.909	9	12	3	12	15	10	11	10.286	10	; oligos_6nt_mkv4_m4 versus MA0072.1 (RORA_2); m=10/17; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=10.2857; ----wwwAwbTAGGTCAr-- ; cor=0.835; Ncor=0.469; logoDP=10.206; NIcor=0.465; NsEucl=0.899; SSD=1.640; NSW=0.909; rcor=9; rNcor=12; rlogoDP=3; rNIcor=12; rNsEucl=15; rSSD=10; rNSW=11; rank_mean=10.286; match_rank=10 a 0 0 0 0 9 17 15 35 23 2 0 28 0 0 0 0 36 15 0 0 c 0 0 0 0 8 2 0 1 0 12 0 0 0 0 0 36 0 6 0 0 g 0 0 0 0 8 7 3 0 0 13 0 8 36 36 0 0 0 10 0 0 t 0 0 0 0 11 10 18 0 13 9 36 0 0 0 36 0 0 5 0 0
MA0112.1_shift9 (ESR1)	0.793	0.485	6.878	0.482	0.912	1.870	0.915	12	11	12	8	8	12	10	10.429	11	; oligos_6nt_mkv4_m4 versus MA0112.1 (ESR1); m=11/17; ncol2=18; w=11; offset=0; strand=D; shift=9; score=10.4286; ---------ccAGGTCaCcr ; cor=0.793; Ncor=0.485; logoDP=6.878; NIcor=0.482; NsEucl=0.912; SSD=1.870; NSW=0.915; rcor=12; rNcor=11; rlogoDP=12; rNIcor=8; rNsEucl=8; rSSD=12; rNSW=10; rank_mean=10.429; match_rank=11 a 0 0 0 0 0 0 0 0 0 1 1 7 2 0 0 0 6 1 2 3 c 0 0 0 0 0 0 0 0 0 5 5 1 0 0 0 7 0 7 5 2 g 0 0 0 0 0 0 0 0 0 1 1 1 7 9 0 2 2 1 1 4 t 0 0 0 0 0 0 0 0 0 2 2 0 0 0 9 0 1 0 1 0
MA0505.1_shift4 (Nr5a2)	0.805	0.503	7.773	0.467	0.902	1.915	0.904	11	7	9	11	14	13	13	11.143	12	; oligos_6nt_mkv4_m4 versus MA0505.1 (Nr5a2); m=12/17; ncol2=15; w=10; offset=-5; strand=D; shift=4; score=11.1429; ----ragtTCAAGGyCAgs- ; cor=0.805; Ncor=0.503; logoDP=7.773; NIcor=0.467; NsEucl=0.902; SSD=1.915; NSW=0.904; rcor=11; rNcor=7; rlogoDP=9; rNIcor=11; rNsEucl=14; rSSD=13; rNSW=13; rank_mean=11.143; match_rank=12 a 0 0 0 0 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 c 0 0 0 0 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 g 0 0 0 0 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 t 0 0 0 0 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0
MA0504.1_shift9 (NR2C2)	0.771	0.565	5.902	0.534	0.906	2.135	0.903	16	5	15	6	11	15	14	11.714	13	; oligos_6nt_mkv4_m4 versus MA0504.1 (NR2C2); m=13/17; ncol2=15; w=11; offset=0; strand=D; shift=9; score=11.7143; ---------mgrGGTCArAG ; cor=0.771; Ncor=0.565; logoDP=5.902; NIcor=0.534; NsEucl=0.906; SSD=2.135; NSW=0.903; rcor=16; rNcor=5; rlogoDP=15; rNIcor=6; rNsEucl=11; rSSD=15; rNSW=14; rank_mean=11.714; match_rank=13 a 0 0 0 0 0 0 0 0 0 129 82 193 0 10 3 6 343 187 324 10 c 0 0 0 0 0 0 0 0 0 126 70 6 8 3 0 309 0 0 0 0 g 0 0 0 0 0 0 0 0 0 90 221 195 366 355 79 54 48 208 71 385 t 0 0 0 0 0 0 0 0 0 50 22 1 21 27 313 26 4 0 0 0
MA0066.1_shift9 (PPARG)	0.776	0.427	6.761	0.428	0.908	2.052	0.907	15	16	13	14	10	14	12	13.429	14	; oligos_6nt_mkv4_m4 versus MA0066.1 (PPARG); m=14/17; ncol2=20; w=11; offset=0; strand=D; shift=9; score=13.4286; ---------sTrGGTCAcsg ; cor=0.776; Ncor=0.427; logoDP=6.761; NIcor=0.428; NsEucl=0.908; SSD=2.052; NSW=0.907; rcor=15; rNcor=16; rlogoDP=13; rNIcor=14; rNsEucl=10; rSSD=14; rNSW=12; rank_mean=13.429; match_rank=14 a 0 0 0 0 0 0 0 0 0 3 3 19 0 1 0 2 26 5 5 4 c 0 0 0 0 0 0 0 0 0 8 0 0 1 0 1 23 1 15 7 2 g 0 0 0 0 0 0 0 0 0 14 0 9 27 26 4 3 0 4 10 18 t 0 0 0 0 0 0 0 0 0 3 25 0 0 1 23 0 1 4 6 4
MA0065.1_shift0 (PPARG::RXRA)	0.778	0.428	8.775	0.416	0.902	2.316	0.895	14	15	7	16	13	16	15	13.714	15	; oligos_6nt_mkv4_m4 versus MA0065.1 (PPARG::RXRA); m=15/17; ncol2=20; w=11; offset=-9; strand=D; shift=0; score=13.7143; yywrrGGTCAAAGGTCAymk ; cor=0.778; Ncor=0.428; logoDP=8.775; NIcor=0.416; NsEucl=0.902; SSD=2.316; NSW=0.895; rcor=14; rNcor=15; rlogoDP=7; rNIcor=16; rNsEucl=13; rSSD=16; rNSW=15; rank_mean=13.714; match_rank=15 a 10 7 19 13 17 0 0 0 2 41 41 39 0 0 0 2 38 10 13 7 c 12 13 4 1 0 0 0 2 37 0 0 0 0 0 2 36 1 12 15 10 g 7 8 6 27 24 41 39 0 2 0 0 2 41 39 0 1 2 4 9 12 t 12 13 12 0 0 0 2 39 0 0 0 0 0 2 39 2 0 15 4 12
MA0115.1_shift2 (NR1H2::RXRA)	0.762	0.424	11.168	0.418	0.882	2.804	0.860	17	17	1	15	16	17	17	14.286	16	; oligos_6nt_mkv4_m4 versus MA0115.1 (NR1H2::RXRA); m=16/17; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=14.2857; --AAAGGTCAAAGGTCAAc- ; cor=0.762; Ncor=0.424; logoDP=11.168; NIcor=0.418; NsEucl=0.882; SSD=2.804; NSW=0.860; rcor=17; rNcor=17; rlogoDP=1; rNIcor=15; rNsEucl=16; rSSD=17; rNSW=17; rank_mean=14.286; match_rank=16 a 0 0 17 17 20 0 0 0 0 25 24 25 0 0 0 0 25 20 0 0 c 0 0 5 1 0 0 0 0 25 0 0 0 0 0 0 25 0 1 15 0 g 0 0 0 5 5 25 24 0 0 0 0 0 25 25 0 0 0 2 6 0 t 0 0 3 2 0 0 1 25 0 0 1 0 0 0 25 0 0 2 4 0
MA0089.1_rc_shift13 (NFE2L1::MafG_rc)	0.791	0.431	0.095	-0.131	0.862	1.362	0.887	13	14	17	17	17	8	16	14.571	17	; oligos_6nt_mkv4_m4 versus MA0089.1_rc (NFE2L1::MafG_rc); m=17/17; ncol2=6; w=6; offset=4; strand=R; shift=13; score=14.5714; -------------GTCATs- ; cor=0.791; Ncor=0.431; logoDP=0.095; NIcor=-0.131; NsEucl=0.862; SSD=1.362; NSW=0.887; rcor=13; rNcor=14; rlogoDP=17; rNIcor=17; rNsEucl=17; rSSD=8; rNSW=16; rank_mean=14.571; match_rank=17 a 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 1 34 0 6 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 32 0 3 10 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0 2 11 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 1 0 29 7 0