One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_jaspar_core_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift3 ; 12 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=15; shift=3; ncol=21; ---byCAAGGTCACCttg--- ; Alignment reference a 0 0 0 55 60 17 301 305 8 6 3 5 322 9 56 83 76 63 0 0 0 c 0 0 0 87 122 293 18 4 3 1 6 307 2 299 241 78 76 64 0 0 0 g 0 0 0 101 56 9 7 17 314 327 5 19 6 13 19 45 81 147 0 0 0 t 0 0 0 93 98 17 10 10 11 2 322 5 6 15 20 130 103 62 0 0 0

MA0141.1_shift1 (Esrrb) 0.987 0.581 8.051 0.580 0.975 0.127 0.994 1 4 4 3 1 1 1 2.143 1
; positions_7nt_m2 versus MA0141.1 (Esrrb); m=1/11; ncol2=12; w=10; offset=-2; strand=D; shift=1; score= 2.1429; -rgsyCAAGGTCA-------- ; cor=0.987; Ncor=0.581; logoDP=8.051; NIcor=0.580; NsEucl=0.975; SSD=0.127; NSW=0.994; rcor=1; rNcor=4; rlogoDP=4; rNIcor=3; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.143; match_rank=1 a 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0 0 0 0 0 0 c 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0 0 0 0 0 0 g 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0 0 0 0 0 0 t 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0 0 0 0 0 0

MA0592.1_shift4 (ESRRA) 0.949 0.696 8.828 0.687 0.951 0.578 0.974 4 1 1 1 3 4 3 2.429 2
; positions_7nt_m2 versus MA0592.1 (ESRRA); m=2/11; ncol2=11; w=11; offset=1; strand=D; shift=4; score= 2.4286; ----yCAAGGTCAcm------ ; cor=0.949; Ncor=0.696; logoDP=8.828; NIcor=0.687; NsEucl=0.951; SSD=0.578; NSW=0.974; rcor=4; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=3; rSSD=4; rNSW=3; rank_mean=2.429; match_rank=2 a 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 0 0 0 0 0 c 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 0 0 0 0 0 g 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 0 0 0 0 0 t 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0 0 0 0 0 0

MA0141.2_shift1 (Esrrb) 0.987 0.580 8.159 0.580 0.974 0.131 0.993 2 5 3 4 2 2 2 2.857 3
; positions_7nt_m2 versus MA0141.2 (Esrrb); m=3/11; ncol2=12; w=10; offset=-2; strand=D; shift=1; score= 2.8571; -rgsyCAAGGTCA-------- ; cor=0.987; Ncor=0.580; logoDP=8.159; NIcor=0.580; NsEucl=0.974; SSD=0.131; NSW=0.993; rcor=2; rNcor=5; rlogoDP=3; rNIcor=4; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=2.857; match_rank=3 a 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 0 0 0 0 0 c 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 0 0 0 0 0 g 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 0 0 0 0 0 t 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0 0 0 0 0 0

MA0071.1_shift3 (RORA_1) 0.887 0.591 8.312 0.590 0.926 1.103 0.945 6 2 2 2 8 6 6 4.571 4
; positions_7nt_m2 versus MA0071.1 (RORA_1); m=4/11; ncol2=10; w=10; offset=0; strand=D; shift=3; score= 4.5714; ---wwcwAGGTCA-------- ; cor=0.887; Ncor=0.591; logoDP=8.312; NIcor=0.590; NsEucl=0.926; SSD=1.103; NSW=0.945; rcor=6; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=8; rSSD=6; rNSW=6; rank_mean=4.571; match_rank=4 a 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 0 0 0 0 0 c 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 0 0 0 0 0 g 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0 0 0 0 0 0

MA0160.1_shift6 (NR4A2) 0.959 0.511 6.265 0.505 0.941 0.438 0.973 3 9 6 9 4 3 4 5.429 5
; positions_7nt_m2 versus MA0160.1 (NR4A2); m=5/11; ncol2=8; w=8; offset=3; strand=D; shift=6; score= 5.4286; ------aAGGTCAc------- ; cor=0.959; Ncor=0.511; logoDP=6.265; NIcor=0.505; NsEucl=0.941; SSD=0.438; NSW=0.973; rcor=3; rNcor=9; rlogoDP=6; rNIcor=9; rNsEucl=4; rSSD=3; rNSW=4; rank_mean=5.429; match_rank=5 a 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 0 0 0 0 0 c 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0 0 0 0 0 0

MA0258.2_shift7 (ESR2) 0.898 0.520 6.101 0.511 0.938 0.927 0.958 5 8 8 8 5 5 5 6.286 6
; positions_7nt_m2 versus MA0258.2 (ESR2); m=6/11; ncol2=15; w=11; offset=4; strand=D; shift=7; score= 6.2857; -------rGGTCAsmstGaCC ; cor=0.898; Ncor=0.520; logoDP=6.101; NIcor=0.511; NsEucl=0.938; SSD=0.927; NSW=0.958; rcor=5; rNcor=8; rlogoDP=8; rNIcor=8; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=6.286; match_rank=6 a 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 1602 1121 3278 434 1111 c 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 975 398 2056 6469 5854 g 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 533 6658 1391 363 0 t 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752 5133 66 1518 977 1278

MA0505.1_shift0 (Nr5a2) 0.864 0.576 7.995 0.561 0.927 1.523 0.937 7 6 5 5 7 7 7 6.286 7
; positions_7nt_m2 versus MA0505.1 (Nr5a2); m=7/11; ncol2=15; w=12; offset=-3; strand=D; shift=0; score= 6.2857; ragtTCAAGGyCAgs------ ; cor=0.864; Ncor=0.576; logoDP=7.995; NIcor=0.561; NsEucl=0.927; SSD=1.523; NSW=0.937; rcor=7; rNcor=6; rlogoDP=5; rNIcor=5; rNsEucl=7; rSSD=7; rNSW=7; rank_mean=6.286; match_rank=7 a 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 0 0 0 0 0 c 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 0 0 0 0 0 g 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 0 0 0 0 0 t 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0 0 0 0 0 0

MA0112.2_shift2 (ESR1) 0.787 0.590 3.745 0.553 0.929 2.242 0.925 9 3 11 6 6 10 8 7.571 8
; positions_7nt_m2 versus MA0112.2 (ESR1); m=8/11; ncol2=20; w=15; offset=-1; strand=D; shift=2; score= 7.5714; --vkscmaGGtCAcccTGaCC ; cor=0.787; Ncor=0.590; logoDP=3.745; NIcor=0.553; NsEucl=0.929; SSD=2.242; NSW=0.925; rcor=9; rNcor=3; rlogoDP=11; rNIcor=6; rNsEucl=6; rSSD=10; rNSW=8; rank_mean=7.571; match_rank=8 a 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 32 21 305 10 59 c 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 19 22 106 436 353 g 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 8 426 31 12 2 t 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56 416 6 33 17 61

MA0112.1_shift5 (ESR1) 0.804 0.523 6.118 0.517 0.921 2.104 0.919 8 7 7 7 9 9 9 8.000 9
; positions_7nt_m2 versus MA0112.1 (ESR1); m=9/11; ncol2=18; w=13; offset=2; strand=D; shift=5; score= 8; -----ccAGGTCaCcrtGrCC ; cor=0.804; Ncor=0.523; logoDP=6.118; NIcor=0.517; NsEucl=0.921; SSD=2.104; NSW=0.919; rcor=8; rNcor=7; rlogoDP=7; rNIcor=7; rNsEucl=9; rSSD=9; rNSW=9; rank_mean=8.000; match_rank=9 a 0 0 0 0 0 1 1 7 2 0 0 0 6 1 2 3 1 1 5 0 0 c 0 0 0 0 0 5 5 1 0 0 0 7 0 7 5 2 1 0 1 8 9 g 0 0 0 0 0 1 1 1 7 9 0 2 2 1 1 4 1 8 3 0 0 t 0 0 0 0 0 2 2 0 0 0 9 0 1 0 1 0 6 0 0 1 0

MA0159.1_shift7 (RXR::RAR_DR5) 0.786 0.412 5.294 0.410 0.913 1.836 0.917 10 11 9 11 11 8 10 10.000 10
; positions_7nt_m2 versus MA0159.1 (RXR::RAR_DR5); m=10/11; ncol2=17; w=11; offset=4; strand=D; shift=7; score= 10; -------rGkTCAysgrsAGK ; cor=0.786; Ncor=0.412; logoDP=5.294; NIcor=0.410; NsEucl=0.913; SSD=1.836; NSW=0.917; rcor=10; rNcor=11; rlogoDP=9; rNIcor=11; rNsEucl=11; rSSD=8; rNSW=10; rank_mean=10.000; match_rank=10 a 0 0 0 0 0 0 0 12 0 1 0 0 22 4 5 5 13 5 17 1 0 c 0 0 0 0 0 0 0 0 0 0 0 18 0 7 8 4 1 6 3 1 1 g 0 0 0 0 0 0 0 11 23 13 1 3 1 5 9 11 7 12 3 20 16 t 0 0 0 0 0 0 0 0 0 9 22 2 0 7 1 3 2 0 0 1 6

MA0258.1_shift5 (ESR2) 0.776 0.504 5.179 0.484 0.917 2.331 0.910 11 10 10 10 10 11 11 10.429 11
; positions_7nt_m2 versus MA0258.1 (ESR2); m=11/11; ncol2=18; w=13; offset=2; strand=D; shift=5; score=10.4286; -----cwrGGTCAsgkTGmCC ; cor=0.776; Ncor=0.504; logoDP=5.179; NIcor=0.484; NsEucl=0.917; SSD=2.331; NSW=0.910; rcor=11; rNcor=10; rlogoDP=10; rNIcor=10; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=10.429; match_rank=11 a 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52 21 63 178 34 46 c 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61 33 25 99 268 289 g 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147 24 265 19 2 0 t 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97 279 4 61 53 22

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)																	; positions_7nt_m2; m=0 (reference); ncol1=15; shift=3; ncol=21; ---byCAAGGTCACCttg--- ; Alignment reference a 0 0 0 55 60 17 301 305 8 6 3 5 322 9 56 83 76 63 0 0 0 c 0 0 0 87 122 293 18 4 3 1 6 307 2 299 241 78 76 64 0 0 0 g 0 0 0 101 56 9 7 17 314 327 5 19 6 13 19 45 81 147 0 0 0 t 0 0 0 93 98 17 10 10 11 2 322 5 6 15 20 130 103 62 0 0 0
MA0141.1_shift1 (Esrrb)	0.987	0.581	8.051	0.580	0.975	0.127	0.994	1	4	4	3	1	1	1	2.143	1	; positions_7nt_m2 versus MA0141.1 (Esrrb); m=1/11; ncol2=12; w=10; offset=-2; strand=D; shift=1; score= 2.1429; -rgsyCAAGGTCA-------- ; cor=0.987; Ncor=0.581; logoDP=8.051; NIcor=0.580; NsEucl=0.975; SSD=0.127; NSW=0.994; rcor=1; rNcor=4; rlogoDP=4; rNIcor=3; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.143; match_rank=1 a 0 1054 673 420 259 310 3326 3567 32 21 182 9 3458 0 0 0 0 0 0 0 0 c 0 800 829 1211 1250 2664 32 2 5 12 46 3376 20 0 0 0 0 0 0 0 0 g 0 985 1370 1209 448 627 248 60 3586 3602 244 170 129 0 0 0 0 0 0 0 0 t 0 793 767 805 1693 52 50 27 31 17 3175 85 27 0 0 0 0 0 0 0 0
MA0592.1_shift4 (ESRRA)	0.949	0.696	8.828	0.687	0.951	0.578	0.974	4	1	1	1	3	4	3	2.429	2	; positions_7nt_m2 versus MA0592.1 (ESRRA); m=2/11; ncol2=11; w=11; offset=1; strand=D; shift=4; score= 2.4286; ----yCAAGGTCAcm------ ; cor=0.949; Ncor=0.696; logoDP=8.828; NIcor=0.687; NsEucl=0.951; SSD=0.578; NSW=0.974; rcor=4; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=3; rSSD=4; rNSW=3; rank_mean=2.429; match_rank=2 a 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 0 0 0 0 0 c 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 0 0 0 0 0 g 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 0 0 0 0 0 t 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0 0 0 0 0 0
MA0141.2_shift1 (Esrrb)	0.987	0.580	8.159	0.580	0.974	0.131	0.993	2	5	3	4	2	2	2	2.857	3	; positions_7nt_m2 versus MA0141.2 (Esrrb); m=3/11; ncol2=12; w=10; offset=-2; strand=D; shift=1; score= 2.8571; -rgsyCAAGGTCA-------- ; cor=0.987; Ncor=0.580; logoDP=8.159; NIcor=0.580; NsEucl=0.974; SSD=0.131; NSW=0.993; rcor=2; rNcor=5; rlogoDP=3; rNIcor=4; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=2.857; match_rank=3 a 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 0 0 0 0 0 c 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 0 0 0 0 0 g 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 0 0 0 0 0 t 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0 0 0 0 0 0
MA0071.1_shift3 (RORA_1)	0.887	0.591	8.312	0.590	0.926	1.103	0.945	6	2	2	2	8	6	6	4.571	4	; positions_7nt_m2 versus MA0071.1 (RORA_1); m=4/11; ncol2=10; w=10; offset=0; strand=D; shift=3; score= 4.5714; ---wwcwAGGTCA-------- ; cor=0.887; Ncor=0.591; logoDP=8.312; NIcor=0.590; NsEucl=0.926; SSD=1.103; NSW=0.945; rcor=6; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=8; rSSD=6; rNSW=6; rank_mean=4.571; match_rank=4 a 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 0 0 0 0 0 c 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 0 0 0 0 0 g 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0 0 0 0 0 0
MA0160.1_shift6 (NR4A2)	0.959	0.511	6.265	0.505	0.941	0.438	0.973	3	9	6	9	4	3	4	5.429	5	; positions_7nt_m2 versus MA0160.1 (NR4A2); m=5/11; ncol2=8; w=8; offset=3; strand=D; shift=6; score= 5.4286; ------aAGGTCAc------- ; cor=0.959; Ncor=0.511; logoDP=6.265; NIcor=0.505; NsEucl=0.941; SSD=0.438; NSW=0.973; rcor=3; rNcor=9; rlogoDP=6; rNIcor=9; rNsEucl=4; rSSD=3; rNSW=4; rank_mean=5.429; match_rank=5 a 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 0 0 0 0 0 c 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0 0 0 0 0 0
MA0258.2_shift7 (ESR2)	0.898	0.520	6.101	0.511	0.938	0.927	0.958	5	8	8	8	5	5	5	6.286	6	; positions_7nt_m2 versus MA0258.2 (ESR2); m=6/11; ncol2=15; w=11; offset=4; strand=D; shift=7; score= 6.2857; -------rGGTCAsmstGaCC ; cor=0.898; Ncor=0.520; logoDP=6.101; NIcor=0.511; NsEucl=0.938; SSD=0.927; NSW=0.958; rcor=5; rNcor=8; rlogoDP=8; rNIcor=8; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=6.286; match_rank=6 a 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 1602 1121 3278 434 1111 c 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 975 398 2056 6469 5854 g 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 533 6658 1391 363 0 t 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752 5133 66 1518 977 1278
MA0505.1_shift0 (Nr5a2)	0.864	0.576	7.995	0.561	0.927	1.523	0.937	7	6	5	5	7	7	7	6.286	7	; positions_7nt_m2 versus MA0505.1 (Nr5a2); m=7/11; ncol2=15; w=12; offset=-3; strand=D; shift=0; score= 6.2857; ragtTCAAGGyCAgs------ ; cor=0.864; Ncor=0.576; logoDP=7.995; NIcor=0.561; NsEucl=0.927; SSD=1.523; NSW=0.937; rcor=7; rNcor=6; rlogoDP=5; rNIcor=5; rNsEucl=7; rSSD=7; rNSW=7; rank_mean=6.286; match_rank=7 a 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 0 0 0 0 0 c 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 0 0 0 0 0 g 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 0 0 0 0 0 t 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0 0 0 0 0 0
MA0112.2_shift2 (ESR1)	0.787	0.590	3.745	0.553	0.929	2.242	0.925	9	3	11	6	6	10	8	7.571	8	; positions_7nt_m2 versus MA0112.2 (ESR1); m=8/11; ncol2=20; w=15; offset=-1; strand=D; shift=2; score= 7.5714; --vkscmaGGtCAcccTGaCC ; cor=0.787; Ncor=0.590; logoDP=3.745; NIcor=0.553; NsEucl=0.929; SSD=2.242; NSW=0.925; rcor=9; rNcor=3; rlogoDP=11; rNIcor=6; rNsEucl=6; rSSD=10; rNSW=8; rank_mean=7.571; match_rank=8 a 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 32 21 305 10 59 c 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 19 22 106 436 353 g 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 8 426 31 12 2 t 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56 416 6 33 17 61
MA0112.1_shift5 (ESR1)	0.804	0.523	6.118	0.517	0.921	2.104	0.919	8	7	7	7	9	9	9	8.000	9	; positions_7nt_m2 versus MA0112.1 (ESR1); m=9/11; ncol2=18; w=13; offset=2; strand=D; shift=5; score= 8; -----ccAGGTCaCcrtGrCC ; cor=0.804; Ncor=0.523; logoDP=6.118; NIcor=0.517; NsEucl=0.921; SSD=2.104; NSW=0.919; rcor=8; rNcor=7; rlogoDP=7; rNIcor=7; rNsEucl=9; rSSD=9; rNSW=9; rank_mean=8.000; match_rank=9 a 0 0 0 0 0 1 1 7 2 0 0 0 6 1 2 3 1 1 5 0 0 c 0 0 0 0 0 5 5 1 0 0 0 7 0 7 5 2 1 0 1 8 9 g 0 0 0 0 0 1 1 1 7 9 0 2 2 1 1 4 1 8 3 0 0 t 0 0 0 0 0 2 2 0 0 0 9 0 1 0 1 0 6 0 0 1 0
MA0159.1_shift7 (RXR::RAR_DR5)	0.786	0.412	5.294	0.410	0.913	1.836	0.917	10	11	9	11	11	8	10	10.000	10	; positions_7nt_m2 versus MA0159.1 (RXR::RAR_DR5); m=10/11; ncol2=17; w=11; offset=4; strand=D; shift=7; score= 10; -------rGkTCAysgrsAGK ; cor=0.786; Ncor=0.412; logoDP=5.294; NIcor=0.410; NsEucl=0.913; SSD=1.836; NSW=0.917; rcor=10; rNcor=11; rlogoDP=9; rNIcor=11; rNsEucl=11; rSSD=8; rNSW=10; rank_mean=10.000; match_rank=10 a 0 0 0 0 0 0 0 12 0 1 0 0 22 4 5 5 13 5 17 1 0 c 0 0 0 0 0 0 0 0 0 0 0 18 0 7 8 4 1 6 3 1 1 g 0 0 0 0 0 0 0 11 23 13 1 3 1 5 9 11 7 12 3 20 16 t 0 0 0 0 0 0 0 0 0 9 22 2 0 7 1 3 2 0 0 1 6
MA0258.1_shift5 (ESR2)	0.776	0.504	5.179	0.484	0.917	2.331	0.910	11	10	10	10	10	11	11	10.429	11	; positions_7nt_m2 versus MA0258.1 (ESR2); m=11/11; ncol2=18; w=13; offset=2; strand=D; shift=5; score=10.4286; -----cwrGGTCAsgkTGmCC ; cor=0.776; Ncor=0.504; logoDP=5.179; NIcor=0.484; NsEucl=0.917; SSD=2.331; NSW=0.910; rcor=11; rNcor=10; rlogoDP=10; rNIcor=10; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=10.429; match_rank=11 a 0 0 0 0 0 78 158 186 27 18 13 0 337 49 64 52 21 63 178 34 46 c 0 0 0 0 0 161 51 15 0 20 19 357 1 123 63 61 33 25 99 268 289 g 0 0 0 0 0 63 41 154 275 319 33 0 0 113 149 147 24 265 19 2 0 t 0 0 0 0 0 55 107 2 55 0 292 0 19 72 81 97 279 4 61 53 22