One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_jaspar_core_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift4 ; 16 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m2_shift4 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=4; ncol=16; ----rrTGACTCAbm- ; Alignment reference a 0 0 0 0 236 279 0 2 812 0 0 2 805 92 215 0 c 0 0 0 0 164 183 4 1 0 812 0 812 1 220 217 0 g 0 0 0 0 229 255 0 811 2 2 2 0 8 245 181 0 t 0 0 0 0 185 97 810 0 0 0 812 0 0 257 201 0

MA0478.1_shift3 (FOSL2) 0.954 0.795 11.120 0.795 0.951 0.478 0.976 2 4 4 4 1 3 1 2.714 1
; oligos_7nt_mkv5_m2 versus MA0478.1 (FOSL2); m=1/15; ncol2=11; w=10; offset=-1; strand=D; shift=3; score= 2.7143; ---krrTGAsTCAb-- ; cor=0.954; Ncor=0.795; logoDP=11.120; NIcor=0.795; NsEucl=0.951; SSD=0.478; NSW=0.976; rcor=2; rNcor=4; rlogoDP=4; rNIcor=4; rNsEucl=1; rSSD=3; rNSW=1; rank_mean=2.714; match_rank=1 a 0 0 0 833 1525 2861 0 0 5075 0 0 205 5318 0 0 0 c 0 0 0 994 592 55 0 0 51 3286 0 5113 0 1399 0 0 g 0 0 0 2086 2707 2328 0 5318 192 1838 0 0 0 1933 0 0 t 0 0 0 1405 494 74 5318 0 0 194 5318 0 0 1986 0 0

MA0477.1_shift4 (FOSL1) 0.943 0.943 11.500 0.945 0.951 0.593 0.973 5 1 1 1 2 6 3 2.714 2
; oligos_7nt_mkv5_m2 versus MA0477.1 (FOSL1); m=2/15; ncol2=11; w=11; offset=0; strand=D; shift=4; score= 2.7143; ----rrTGAsTCAks- ; cor=0.943; Ncor=0.943; logoDP=11.500; NIcor=0.945; NsEucl=0.951; SSD=0.593; NSW=0.973; rcor=5; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=2; rSSD=6; rNSW=3; rank_mean=2.714; match_rank=2 a 0 0 0 0 1791 1568 0 0 5272 124 0 177 5272 37 1184 0 c 0 0 0 0 119 437 0 0 0 3120 0 5095 0 811 1684 0 g 0 0 0 0 2384 3109 0 5272 0 2028 0 0 0 1734 1875 0 t 0 0 0 0 978 158 5272 0 0 0 5272 0 0 2690 529 0

MA0490.1_shift3 (JUNB) 0.949 0.791 11.221 0.790 0.949 0.522 0.974 3 5 3 5 3 4 2 3.571 3
; oligos_7nt_mkv5_m2 versus MA0490.1 (JUNB); m=3/15; ncol2=11; w=10; offset=-1; strand=D; shift=3; score= 3.5714; ---grrTGAsTCAk-- ; cor=0.949; Ncor=0.791; logoDP=11.221; NIcor=0.790; NsEucl=0.949; SSD=0.522; NSW=0.974; rcor=3; rNcor=5; rlogoDP=3; rNIcor=5; rNsEucl=3; rSSD=4; rNSW=2; rank_mean=3.571; match_rank=3 a 0 0 0 3605 5055 8384 0 0 16992 0 0 1256 16992 736 0 0 c 0 0 0 3366 1057 582 0 0 0 9859 0 15736 0 2962 0 0 g 0 0 0 5983 8427 8026 0 16992 0 6281 0 0 0 6117 0 0 t 0 0 0 4038 2453 0 16992 0 0 852 16992 0 0 7177 0 0

MA0491.1_shift4 (JUND) 0.926 0.926 11.425 0.920 0.943 0.783 0.964 6 2 2 2 5 7 6 4.286 4
; oligos_7nt_mkv5_m2 versus MA0491.1 (JUND); m=4/15; ncol2=11; w=11; offset=0; strand=D; shift=4; score= 4.2857; ----drTGAsTCATs- ; cor=0.926; Ncor=0.926; logoDP=11.425; NIcor=0.920; NsEucl=0.943; SSD=0.783; NSW=0.964; rcor=6; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=5; rSSD=7; rNSW=6; rank_mean=4.286; match_rank=4 a 0 0 0 0 12389 15163 0 0 38710 0 0 1547 38710 0 5786 0 c 0 0 0 0 759 4824 0 0 0 22857 0 37163 0 5136 14956 0 g 0 0 0 0 13640 18723 0 38710 0 14078 0 0 0 2301 12429 0 t 0 0 0 0 11922 0 38710 0 0 1775 38710 0 0 31273 5539 0

MA0489.1_shift0 (JUN_(var.2)) 0.947 0.631 10.826 0.626 0.948 0.547 0.973 4 8 6 6 4 5 4 5.286 5
; oligos_7nt_mkv5_m2 versus MA0489.1 (JUN_(var.2)); m=5/15; ncol2=14; w=10; offset=-4; strand=D; shift=0; score= 5.2857; rrrrrrTGAsTCAt-- ; cor=0.947; Ncor=0.631; logoDP=10.826; NIcor=0.626; NsEucl=0.948; SSD=0.547; NSW=0.973; rcor=4; rNcor=8; rlogoDP=6; rNIcor=6; rNsEucl=4; rSSD=5; rNSW=4; rank_mean=5.286; match_rank=5 a 4852 3927 3726 4396 4146 5930 0 0 10953 382 199 956 10956 376 0 0 c 1250 1324 1127 1122 593 993 0 0 0 5704 0 10000 0 2509 0 0 g 2818 4110 4330 3461 4213 4033 0 10956 0 4090 0 0 0 2645 0 0 t 2036 1595 1773 1977 2004 0 10956 0 3 780 10757 0 0 5426 0 0

MA0476.1_shift4 (FOS) 0.921 0.921 10.973 0.913 0.942 0.809 0.963 8 3 5 3 6 8 7 5.714 6
; oligos_7nt_mkv5_m2 versus MA0476.1 (FOS); m=6/15; ncol2=11; w=11; offset=0; strand=D; shift=4; score= 5.7143; ----dvTGAsTCATb- ; cor=0.921; Ncor=0.921; logoDP=10.973; NIcor=0.913; NsEucl=0.942; SSD=0.809; NSW=0.963; rcor=8; rNcor=3; rlogoDP=5; rNIcor=3; rNsEucl=6; rSSD=8; rNSW=7; rank_mean=5.714; match_rank=6 a 0 0 0 0 7879 7475 0 0 29396 998 0 0 29396 258 4006 0 c 0 0 0 0 712 10177 0 0 0 14079 0 29396 0 5823 8236 0 g 0 0 0 0 9686 10841 0 27108 0 11206 0 0 0 1538 7897 0 t 0 0 0 0 11119 903 29396 2288 0 3113 29396 0 0 21777 9257 0

MA0099.2_shift6 (JUN::FOS) 0.974 0.620 7.313 0.622 0.934 0.422 0.970 1 11 12 7 7 1 5 6.286 7
; oligos_7nt_mkv5_m2 versus MA0099.2 (JUN::FOS); m=7/15; ncol2=7; w=7; offset=2; strand=D; shift=6; score= 6.2857; ------TGAmTCA--- ; cor=0.974; Ncor=0.620; logoDP=7.313; NIcor=0.622; NsEucl=0.934; SSD=0.422; NSW=0.970; rcor=1; rNcor=11; rlogoDP=12; rNIcor=7; rNsEucl=7; rSSD=1; rNSW=5; rank_mean=6.286; match_rank=7 a 0 0 0 0 0 0 0 0 16 5 3 0 16 0 0 0 c 0 0 0 0 0 0 1 0 2 12 0 15 0 0 0 0 g 0 0 0 0 0 0 0 15 0 1 1 3 1 0 0 0 t 0 0 0 0 0 0 17 3 0 0 14 0 1 0 0 0

MA0462.1_shift2 (BATF::JUN) 0.909 0.630 10.268 0.620 0.925 0.916 0.949 10 10 8 8 8 10 10 9.143 8
; oligos_7nt_mkv5_m2 versus MA0462.1 (BATF::JUN); m=8/15; ncol2=11; w=9; offset=-2; strand=D; shift=2; score= 9.1429; --rrwATGAsTCA--- ; cor=0.909; Ncor=0.630; logoDP=10.268; NIcor=0.620; NsEucl=0.925; SSD=0.916; NSW=0.949; rcor=10; rNcor=10; rlogoDP=8; rNIcor=8; rNsEucl=8; rSSD=10; rNSW=10; rank_mean=9.143; match_rank=8 a 0 0 3082 4782 4519 8258 0 0 10522 586 0 1291 10264 0 0 0 c 0 0 481 553 170 1478 0 0 0 5026 0 8590 0 0 0 0 g 0 0 5136 2889 2219 0 0 10374 0 4910 0 641 0 0 0 0 t 0 0 1823 2298 3614 786 10522 148 0 0 10522 0 258 0 0 0

MA0089.1_shift4 (NFE2L1::MafG) 0.922 0.503 5.953 0.490 0.919 0.471 0.961 7 14 13 13 10 2 8 9.571 9
; oligos_7nt_mkv5_m2 versus MA0089.1 (NFE2L1::MafG); m=9/15; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 9.5714; ----sATGAC------ ; cor=0.922; Ncor=0.503; logoDP=5.953; NIcor=0.490; NsEucl=0.919; SSD=0.471; NSW=0.961; rcor=7; rNcor=14; rlogoDP=13; rNIcor=13; rNsEucl=10; rSSD=2; rNSW=8; rank_mean=9.571; match_rank=9 a 0 0 0 0 7 29 0 1 34 0 0 0 0 0 0 0 c 0 0 0 0 11 2 0 0 0 26 0 0 0 0 0 0 g 0 0 0 0 10 3 0 32 0 2 0 0 0 0 0 0 t 0 0 0 0 6 0 34 1 0 6 0 0 0 0 0 0

MA0099.1_rc_shift6 (JUN::FOS_rc) 0.920 0.669 0.532 -0.216 0.920 0.813 0.949 9 6 14 15 9 9 9 10.143 10
; oligos_7nt_mkv5_m2 versus MA0099.1_rc (JUN::FOS_rc); m=10/15; ncol2=8; w=8; offset=2; strand=R; shift=6; score=10.1429; ------TKAsTCAy-- ; cor=0.920; Ncor=0.669; logoDP=0.532; NIcor=-0.216; NsEucl=0.920; SSD=0.813; NSW=0.949; rcor=9; rNcor=6; rlogoDP=14; rNIcor=15; rNsEucl=9; rSSD=9; rNSW=9; rank_mean=10.143; match_rank=10 a 0 0 0 0 0 0 1 0 17 3 0 0 19 0 0 0 c 0 0 0 0 0 0 0 0 0 9 0 18 0 12 0 0 g 0 0 0 0 0 0 0 13 1 6 1 1 0 2 0 0 t 0 0 0 0 0 0 18 6 1 1 18 0 0 5 0 0

MA0591.1_shift2 (Bach1::Mafk) 0.859 0.630 10.367 0.606 0.917 1.656 0.925 12 9 7 9 11 13 11 10.286 11
; oligos_7nt_mkv5_m2 versus MA0591.1 (Bach1::Mafk); m=11/15; ncol2=15; w=11; offset=-2; strand=D; shift=2; score=10.2857; --rssrTGACTCAGCA ; cor=0.859; Ncor=0.630; logoDP=10.367; NIcor=0.606; NsEucl=0.917; SSD=1.656; NSW=0.925; rcor=12; rNcor=9; rlogoDP=7; rNIcor=9; rNsEucl=11; rSSD=13; rNSW=11; rank_mean=10.286; match_rank=11 a 0 0 45 14 15 66 2 0 113 0 1 5 108 0 0 98 c 0 0 14 36 41 16 1 0 0 94 0 107 1 1 114 4 g 0 0 41 46 54 32 0 107 0 20 4 2 3 113 0 6 t 0 0 14 18 4 0 111 7 1 0 109 0 2 0 0 6

MA0501.1_shift5 (NFE2::MAF) 0.863 0.539 9.764 0.513 0.912 1.545 0.923 11 13 9 12 13 12 12 11.714 12
; oligos_7nt_mkv5_m2 versus MA0501.1 (NFE2::MAF); m=12/15; ncol2=15; w=10; offset=1; strand=D; shift=5; score=11.7143; -----rTGACTCAGCA ; cor=0.863; Ncor=0.539; logoDP=9.764; NIcor=0.513; NsEucl=0.912; SSD=1.545; NSW=0.923; rcor=11; rNcor=13; rlogoDP=9; rNIcor=12; rNsEucl=13; rSSD=12; rNSW=12; rank_mean=11.714; match_rank=12 a 0 0 0 0 0 726 0 0 1090 16 110 80 978 8 0 931 c 0 0 0 0 0 26 0 0 0 871 1 937 0 4 1063 17 g 0 0 0 0 0 334 0 1082 0 166 12 22 51 1041 22 73 t 0 0 0 0 0 4 1090 8 0 37 967 51 61 37 5 69

MA0150.2_shift1 (Nfe2l2) 0.839 0.615 8.330 0.579 0.916 1.716 0.922 13 12 10 11 12 14 13 12.143 13
; oligos_7nt_mkv5_m2 versus MA0150.2 (Nfe2l2); m=13/15; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=12.1429; -casmrTGACTCAGCA ; cor=0.839; Ncor=0.615; logoDP=8.330; NIcor=0.579; NsEucl=0.916; SSD=1.716; NSW=0.922; rcor=13; rNcor=12; rlogoDP=10; rNIcor=11; rNsEucl=12; rSSD=14; rNSW=13; rank_mean=12.143; match_rank=13 a 0 166 401 118 203 488 0 0 726 20 84 65 577 10 4 623 c 0 338 78 239 247 28 0 0 0 533 20 549 3 11 699 26 g 0 109 159 275 152 205 0 711 0 118 16 46 90 698 19 31 t 0 113 88 94 124 5 726 15 0 55 606 66 56 7 4 46

MA0150.1_shift5 (NFE2L2) 0.783 0.653 7.508 0.588 0.894 2.227 0.889 15 7 11 10 14 15 15 12.429 14
; oligos_7nt_mkv5_m2 versus MA0150.1 (NFE2L2); m=14/15; ncol2=11; w=10; offset=1; strand=D; shift=5; score=12.4286; -----rTGACwmAGCA ; cor=0.783; Ncor=0.653; logoDP=7.508; NIcor=0.588; NsEucl=0.894; SSD=2.227; NSW=0.889; rcor=15; rNcor=7; rlogoDP=11; rNIcor=10; rNsEucl=14; rSSD=15; rNSW=15; rank_mean=12.429; match_rank=14 a 0 0 0 0 0 10 0 0 20 0 6 5 16 0 0 15 c 0 0 0 0 0 1 0 0 0 17 2 10 0 0 20 2 g 0 0 0 0 0 9 0 19 0 1 1 1 2 20 0 2 t 0 0 0 0 0 0 20 1 0 2 11 4 2 0 0 1

MA0067.1_rc_shift3 (Pax2_rc) 0.821 0.479 0.313 -0.162 0.888 1.233 0.912 14 15 15 14 15 11 14 14.000 15
; oligos_7nt_mkv5_m2 versus MA0067.1_rc (Pax2_rc); m=15/15; ncol2=8; w=7; offset=-1; strand=R; shift=3; score= 14; ---vmrTGAcw----- ; cor=0.821; Ncor=0.479; logoDP=0.313; NIcor=-0.162; NsEucl=0.888; SSD=1.233; NSW=0.912; rcor=14; rNcor=15; rlogoDP=15; rNIcor=14; rNsEucl=15; rSSD=11; rNSW=14; rank_mean=14.000; match_rank=15 a 0 0 0 8 10 11 1 2 26 2 9 0 0 0 0 0 c 0 0 0 11 19 1 3 1 0 21 5 0 0 0 0 0 g 0 0 0 11 0 17 1 28 2 1 7 0 0 0 0 0 t 0 0 0 1 2 2 26 0 3 7 10 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m2_shift4 (oligos_7nt_mkv5_m2)																	; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=4; ncol=16; ----rrTGACTCAbm- ; Alignment reference a 0 0 0 0 236 279 0 2 812 0 0 2 805 92 215 0 c 0 0 0 0 164 183 4 1 0 812 0 812 1 220 217 0 g 0 0 0 0 229 255 0 811 2 2 2 0 8 245 181 0 t 0 0 0 0 185 97 810 0 0 0 812 0 0 257 201 0
MA0478.1_shift3 (FOSL2)	0.954	0.795	11.120	0.795	0.951	0.478	0.976	2	4	4	4	1	3	1	2.714	1	; oligos_7nt_mkv5_m2 versus MA0478.1 (FOSL2); m=1/15; ncol2=11; w=10; offset=-1; strand=D; shift=3; score= 2.7143; ---krrTGAsTCAb-- ; cor=0.954; Ncor=0.795; logoDP=11.120; NIcor=0.795; NsEucl=0.951; SSD=0.478; NSW=0.976; rcor=2; rNcor=4; rlogoDP=4; rNIcor=4; rNsEucl=1; rSSD=3; rNSW=1; rank_mean=2.714; match_rank=1 a 0 0 0 833 1525 2861 0 0 5075 0 0 205 5318 0 0 0 c 0 0 0 994 592 55 0 0 51 3286 0 5113 0 1399 0 0 g 0 0 0 2086 2707 2328 0 5318 192 1838 0 0 0 1933 0 0 t 0 0 0 1405 494 74 5318 0 0 194 5318 0 0 1986 0 0
MA0477.1_shift4 (FOSL1)	0.943	0.943	11.500	0.945	0.951	0.593	0.973	5	1	1	1	2	6	3	2.714	2	; oligos_7nt_mkv5_m2 versus MA0477.1 (FOSL1); m=2/15; ncol2=11; w=11; offset=0; strand=D; shift=4; score= 2.7143; ----rrTGAsTCAks- ; cor=0.943; Ncor=0.943; logoDP=11.500; NIcor=0.945; NsEucl=0.951; SSD=0.593; NSW=0.973; rcor=5; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=2; rSSD=6; rNSW=3; rank_mean=2.714; match_rank=2 a 0 0 0 0 1791 1568 0 0 5272 124 0 177 5272 37 1184 0 c 0 0 0 0 119 437 0 0 0 3120 0 5095 0 811 1684 0 g 0 0 0 0 2384 3109 0 5272 0 2028 0 0 0 1734 1875 0 t 0 0 0 0 978 158 5272 0 0 0 5272 0 0 2690 529 0
MA0490.1_shift3 (JUNB)	0.949	0.791	11.221	0.790	0.949	0.522	0.974	3	5	3	5	3	4	2	3.571	3	; oligos_7nt_mkv5_m2 versus MA0490.1 (JUNB); m=3/15; ncol2=11; w=10; offset=-1; strand=D; shift=3; score= 3.5714; ---grrTGAsTCAk-- ; cor=0.949; Ncor=0.791; logoDP=11.221; NIcor=0.790; NsEucl=0.949; SSD=0.522; NSW=0.974; rcor=3; rNcor=5; rlogoDP=3; rNIcor=5; rNsEucl=3; rSSD=4; rNSW=2; rank_mean=3.571; match_rank=3 a 0 0 0 3605 5055 8384 0 0 16992 0 0 1256 16992 736 0 0 c 0 0 0 3366 1057 582 0 0 0 9859 0 15736 0 2962 0 0 g 0 0 0 5983 8427 8026 0 16992 0 6281 0 0 0 6117 0 0 t 0 0 0 4038 2453 0 16992 0 0 852 16992 0 0 7177 0 0
MA0491.1_shift4 (JUND)	0.926	0.926	11.425	0.920	0.943	0.783	0.964	6	2	2	2	5	7	6	4.286	4	; oligos_7nt_mkv5_m2 versus MA0491.1 (JUND); m=4/15; ncol2=11; w=11; offset=0; strand=D; shift=4; score= 4.2857; ----drTGAsTCATs- ; cor=0.926; Ncor=0.926; logoDP=11.425; NIcor=0.920; NsEucl=0.943; SSD=0.783; NSW=0.964; rcor=6; rNcor=2; rlogoDP=2; rNIcor=2; rNsEucl=5; rSSD=7; rNSW=6; rank_mean=4.286; match_rank=4 a 0 0 0 0 12389 15163 0 0 38710 0 0 1547 38710 0 5786 0 c 0 0 0 0 759 4824 0 0 0 22857 0 37163 0 5136 14956 0 g 0 0 0 0 13640 18723 0 38710 0 14078 0 0 0 2301 12429 0 t 0 0 0 0 11922 0 38710 0 0 1775 38710 0 0 31273 5539 0
MA0489.1_shift0 (JUN_(var.2))	0.947	0.631	10.826	0.626	0.948	0.547	0.973	4	8	6	6	4	5	4	5.286	5	; oligos_7nt_mkv5_m2 versus MA0489.1 (JUN_(var.2)); m=5/15; ncol2=14; w=10; offset=-4; strand=D; shift=0; score= 5.2857; rrrrrrTGAsTCAt-- ; cor=0.947; Ncor=0.631; logoDP=10.826; NIcor=0.626; NsEucl=0.948; SSD=0.547; NSW=0.973; rcor=4; rNcor=8; rlogoDP=6; rNIcor=6; rNsEucl=4; rSSD=5; rNSW=4; rank_mean=5.286; match_rank=5 a 4852 3927 3726 4396 4146 5930 0 0 10953 382 199 956 10956 376 0 0 c 1250 1324 1127 1122 593 993 0 0 0 5704 0 10000 0 2509 0 0 g 2818 4110 4330 3461 4213 4033 0 10956 0 4090 0 0 0 2645 0 0 t 2036 1595 1773 1977 2004 0 10956 0 3 780 10757 0 0 5426 0 0
MA0476.1_shift4 (FOS)	0.921	0.921	10.973	0.913	0.942	0.809	0.963	8	3	5	3	6	8	7	5.714	6	; oligos_7nt_mkv5_m2 versus MA0476.1 (FOS); m=6/15; ncol2=11; w=11; offset=0; strand=D; shift=4; score= 5.7143; ----dvTGAsTCATb- ; cor=0.921; Ncor=0.921; logoDP=10.973; NIcor=0.913; NsEucl=0.942; SSD=0.809; NSW=0.963; rcor=8; rNcor=3; rlogoDP=5; rNIcor=3; rNsEucl=6; rSSD=8; rNSW=7; rank_mean=5.714; match_rank=6 a 0 0 0 0 7879 7475 0 0 29396 998 0 0 29396 258 4006 0 c 0 0 0 0 712 10177 0 0 0 14079 0 29396 0 5823 8236 0 g 0 0 0 0 9686 10841 0 27108 0 11206 0 0 0 1538 7897 0 t 0 0 0 0 11119 903 29396 2288 0 3113 29396 0 0 21777 9257 0
MA0099.2_shift6 (JUN::FOS)	0.974	0.620	7.313	0.622	0.934	0.422	0.970	1	11	12	7	7	1	5	6.286	7	; oligos_7nt_mkv5_m2 versus MA0099.2 (JUN::FOS); m=7/15; ncol2=7; w=7; offset=2; strand=D; shift=6; score= 6.2857; ------TGAmTCA--- ; cor=0.974; Ncor=0.620; logoDP=7.313; NIcor=0.622; NsEucl=0.934; SSD=0.422; NSW=0.970; rcor=1; rNcor=11; rlogoDP=12; rNIcor=7; rNsEucl=7; rSSD=1; rNSW=5; rank_mean=6.286; match_rank=7 a 0 0 0 0 0 0 0 0 16 5 3 0 16 0 0 0 c 0 0 0 0 0 0 1 0 2 12 0 15 0 0 0 0 g 0 0 0 0 0 0 0 15 0 1 1 3 1 0 0 0 t 0 0 0 0 0 0 17 3 0 0 14 0 1 0 0 0
MA0462.1_shift2 (BATF::JUN)	0.909	0.630	10.268	0.620	0.925	0.916	0.949	10	10	8	8	8	10	10	9.143	8	; oligos_7nt_mkv5_m2 versus MA0462.1 (BATF::JUN); m=8/15; ncol2=11; w=9; offset=-2; strand=D; shift=2; score= 9.1429; --rrwATGAsTCA--- ; cor=0.909; Ncor=0.630; logoDP=10.268; NIcor=0.620; NsEucl=0.925; SSD=0.916; NSW=0.949; rcor=10; rNcor=10; rlogoDP=8; rNIcor=8; rNsEucl=8; rSSD=10; rNSW=10; rank_mean=9.143; match_rank=8 a 0 0 3082 4782 4519 8258 0 0 10522 586 0 1291 10264 0 0 0 c 0 0 481 553 170 1478 0 0 0 5026 0 8590 0 0 0 0 g 0 0 5136 2889 2219 0 0 10374 0 4910 0 641 0 0 0 0 t 0 0 1823 2298 3614 786 10522 148 0 0 10522 0 258 0 0 0
MA0089.1_shift4 (NFE2L1::MafG)	0.922	0.503	5.953	0.490	0.919	0.471	0.961	7	14	13	13	10	2	8	9.571	9	; oligos_7nt_mkv5_m2 versus MA0089.1 (NFE2L1::MafG); m=9/15; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 9.5714; ----sATGAC------ ; cor=0.922; Ncor=0.503; logoDP=5.953; NIcor=0.490; NsEucl=0.919; SSD=0.471; NSW=0.961; rcor=7; rNcor=14; rlogoDP=13; rNIcor=13; rNsEucl=10; rSSD=2; rNSW=8; rank_mean=9.571; match_rank=9 a 0 0 0 0 7 29 0 1 34 0 0 0 0 0 0 0 c 0 0 0 0 11 2 0 0 0 26 0 0 0 0 0 0 g 0 0 0 0 10 3 0 32 0 2 0 0 0 0 0 0 t 0 0 0 0 6 0 34 1 0 6 0 0 0 0 0 0
MA0099.1_rc_shift6 (JUN::FOS_rc)	0.920	0.669	0.532	-0.216	0.920	0.813	0.949	9	6	14	15	9	9	9	10.143	10	; oligos_7nt_mkv5_m2 versus MA0099.1_rc (JUN::FOS_rc); m=10/15; ncol2=8; w=8; offset=2; strand=R; shift=6; score=10.1429; ------TKAsTCAy-- ; cor=0.920; Ncor=0.669; logoDP=0.532; NIcor=-0.216; NsEucl=0.920; SSD=0.813; NSW=0.949; rcor=9; rNcor=6; rlogoDP=14; rNIcor=15; rNsEucl=9; rSSD=9; rNSW=9; rank_mean=10.143; match_rank=10 a 0 0 0 0 0 0 1 0 17 3 0 0 19 0 0 0 c 0 0 0 0 0 0 0 0 0 9 0 18 0 12 0 0 g 0 0 0 0 0 0 0 13 1 6 1 1 0 2 0 0 t 0 0 0 0 0 0 18 6 1 1 18 0 0 5 0 0
MA0591.1_shift2 (Bach1::Mafk)	0.859	0.630	10.367	0.606	0.917	1.656	0.925	12	9	7	9	11	13	11	10.286	11	; oligos_7nt_mkv5_m2 versus MA0591.1 (Bach1::Mafk); m=11/15; ncol2=15; w=11; offset=-2; strand=D; shift=2; score=10.2857; --rssrTGACTCAGCA ; cor=0.859; Ncor=0.630; logoDP=10.367; NIcor=0.606; NsEucl=0.917; SSD=1.656; NSW=0.925; rcor=12; rNcor=9; rlogoDP=7; rNIcor=9; rNsEucl=11; rSSD=13; rNSW=11; rank_mean=10.286; match_rank=11 a 0 0 45 14 15 66 2 0 113 0 1 5 108 0 0 98 c 0 0 14 36 41 16 1 0 0 94 0 107 1 1 114 4 g 0 0 41 46 54 32 0 107 0 20 4 2 3 113 0 6 t 0 0 14 18 4 0 111 7 1 0 109 0 2 0 0 6
MA0501.1_shift5 (NFE2::MAF)	0.863	0.539	9.764	0.513	0.912	1.545	0.923	11	13	9	12	13	12	12	11.714	12	; oligos_7nt_mkv5_m2 versus MA0501.1 (NFE2::MAF); m=12/15; ncol2=15; w=10; offset=1; strand=D; shift=5; score=11.7143; -----rTGACTCAGCA ; cor=0.863; Ncor=0.539; logoDP=9.764; NIcor=0.513; NsEucl=0.912; SSD=1.545; NSW=0.923; rcor=11; rNcor=13; rlogoDP=9; rNIcor=12; rNsEucl=13; rSSD=12; rNSW=12; rank_mean=11.714; match_rank=12 a 0 0 0 0 0 726 0 0 1090 16 110 80 978 8 0 931 c 0 0 0 0 0 26 0 0 0 871 1 937 0 4 1063 17 g 0 0 0 0 0 334 0 1082 0 166 12 22 51 1041 22 73 t 0 0 0 0 0 4 1090 8 0 37 967 51 61 37 5 69
MA0150.2_shift1 (Nfe2l2)	0.839	0.615	8.330	0.579	0.916	1.716	0.922	13	12	10	11	12	14	13	12.143	13	; oligos_7nt_mkv5_m2 versus MA0150.2 (Nfe2l2); m=13/15; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=12.1429; -casmrTGACTCAGCA ; cor=0.839; Ncor=0.615; logoDP=8.330; NIcor=0.579; NsEucl=0.916; SSD=1.716; NSW=0.922; rcor=13; rNcor=12; rlogoDP=10; rNIcor=11; rNsEucl=12; rSSD=14; rNSW=13; rank_mean=12.143; match_rank=13 a 0 166 401 118 203 488 0 0 726 20 84 65 577 10 4 623 c 0 338 78 239 247 28 0 0 0 533 20 549 3 11 699 26 g 0 109 159 275 152 205 0 711 0 118 16 46 90 698 19 31 t 0 113 88 94 124 5 726 15 0 55 606 66 56 7 4 46
MA0150.1_shift5 (NFE2L2)	0.783	0.653	7.508	0.588	0.894	2.227	0.889	15	7	11	10	14	15	15	12.429	14	; oligos_7nt_mkv5_m2 versus MA0150.1 (NFE2L2); m=14/15; ncol2=11; w=10; offset=1; strand=D; shift=5; score=12.4286; -----rTGACwmAGCA ; cor=0.783; Ncor=0.653; logoDP=7.508; NIcor=0.588; NsEucl=0.894; SSD=2.227; NSW=0.889; rcor=15; rNcor=7; rlogoDP=11; rNIcor=10; rNsEucl=14; rSSD=15; rNSW=15; rank_mean=12.429; match_rank=14 a 0 0 0 0 0 10 0 0 20 0 6 5 16 0 0 15 c 0 0 0 0 0 1 0 0 0 17 2 10 0 0 20 2 g 0 0 0 0 0 9 0 19 0 1 1 1 2 20 0 2 t 0 0 0 0 0 0 20 1 0 2 11 4 2 0 0 1
MA0067.1_rc_shift3 (Pax2_rc)	0.821	0.479	0.313	-0.162	0.888	1.233	0.912	14	15	15	14	15	11	14	14.000	15	; oligos_7nt_mkv5_m2 versus MA0067.1_rc (Pax2_rc); m=15/15; ncol2=8; w=7; offset=-1; strand=R; shift=3; score= 14; ---vmrTGAcw----- ; cor=0.821; Ncor=0.479; logoDP=0.313; NIcor=-0.162; NsEucl=0.888; SSD=1.233; NSW=0.912; rcor=14; rNcor=15; rlogoDP=15; rNIcor=14; rNsEucl=15; rSSD=11; rNSW=14; rank_mean=14.000; match_rank=15 a 0 0 0 8 10 11 1 2 26 2 9 0 0 0 0 0 c 0 0 0 11 19 1 3 1 0 21 5 0 0 0 0 0 g 0 0 0 11 0 17 1 28 2 1 7 0 0 0 0 0 t 0 0 0 1 2 2 26 0 3 7 10 0 0 0 0 0