One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2013-11.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.093009_2014-10-07.093009_rKpHEN/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_jaspar_core_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift6 ; 12 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
positions_6nt_m2_shift6 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=14; shift=6; ncol=20; ------acCATGACCTGGbc ; Alignment reference a 0 0 0 0 0 0 74 45 17 145 0 0 205 0 1 0 11 18 45 42 c 0 0 0 0 0 0 34 61 153 32 0 0 0 204 204 2 1 17 53 61 g 0 0 0 0 0 0 51 50 19 14 0 205 0 0 0 0 163 156 55 51 t 0 0 0 0 0 0 46 49 16 14 205 0 0 1 0 203 30 14 52 51

MA0089.1_shift8 (NFE2L1::MafG) 0.948 0.406 6.304 0.400 0.928 0.371 0.969 1 11 1 1 1 1 1 2.429 1
; positions_6nt_m2 versus MA0089.1 (NFE2L1::MafG); m=1/11; ncol2=6; w=6; offset=2; strand=D; shift=8; score= 2.4286; --------sATGAC------ ; cor=0.948; Ncor=0.406; logoDP=6.304; NIcor=0.400; NsEucl=0.928; SSD=0.371; NSW=0.969; rcor=1; rNcor=11; rlogoDP=1; rNIcor=1; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.429; match_rank=1 a 0 0 0 0 0 0 0 0 7 29 0 1 34 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 11 2 0 0 0 26 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 10 3 0 32 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 0 34 1 0 6 0 0 0 0 0 0

MA0071.1_rc_shift10 (RORA_1_rc) 0.867 0.619 1.095 -0.085 0.918 1.343 0.933 2 1 9 9 3 2 2 4.000 2
; positions_6nt_m2 versus MA0071.1_rc (RORA_1_rc); m=2/11; ncol2=10; w=10; offset=4; strand=R; shift=10; score= 4; ----------TGACCTwgww ; cor=0.867; Ncor=0.619; logoDP=1.095; NIcor=-0.085; NsEucl=0.918; SSD=1.343; NSW=0.933; rcor=2; rNcor=1; rlogoDP=9; rNIcor=9; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=4.000; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0 7 3 15 7 c 0 0 0 0 0 0 0 0 0 0 0 0 0 25 25 4 5 4 0 2 g 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0 0 2 12 1 1 t 0 0 0 0 0 0 0 0 0 0 25 0 0 0 0 21 11 6 9 15

MA0258.2_rc_shift1 (ESR2_rc) 0.853 0.449 2.624 0.342 0.917 1.392 0.930 5 9 3 2 4 3 3 4.143 3
; positions_6nt_m2 versus MA0258.2_rc (ESR2_rc); m=3/11; ncol2=15; w=10; offset=-5; strand=R; shift=1; score= 4.1429; -rGGtCasksTGACCy---- ; cor=0.853; Ncor=0.449; logoDP=2.624; NIcor=0.342; NsEucl=0.917; SSD=1.392; NSW=0.930; rcor=5; rNcor=9; rlogoDP=3; rNIcor=2; rNsEucl=4; rSSD=3; rNSW=3; rank_mean=4.143; match_rank=3 a 0 4095 1278 977 1518 66 5133 1752 1228 801 87 89 7033 41 644 174 0 0 0 0 c 0 606 0 363 1391 6658 533 2173 1688 2738 57 533 989 8143 7170 2563 0 0 0 0 g 0 2708 5854 6469 2056 398 975 2510 3235 4202 1 7621 147 0 0 96 0 0 0 0 t 0 834 1111 434 3278 1121 1602 1808 2092 502 8098 0 74 59 429 5410 0 0 0 0

MA0141.1_rc_shift10 (Esrrb_rc) 0.863 0.539 1.344 0.045 0.916 1.401 0.930 3 3 6 5 5 4 4 4.286 4
; positions_6nt_m2 versus MA0141.1_rc (Esrrb_rc); m=4/11; ncol2=12; w=10; offset=4; strand=R; shift=10; score= 4.2857; ----------TGACCTTGrs ; cor=0.863; Ncor=0.539; logoDP=1.344; NIcor=0.045; NsEucl=0.916; SSD=1.401; NSW=0.930; rcor=3; rNcor=3; rlogoDP=6; rNIcor=5; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=4.286; match_rank=4 a 0 0 0 0 0 0 0 0 0 0 27 85 3175 17 31 27 50 52 1693 805 c 0 0 0 0 0 0 0 0 0 0 129 170 244 3602 3586 60 248 627 448 1209 g 0 0 0 0 0 0 0 0 0 0 20 3376 46 12 5 2 32 2664 1250 1211 t 0 0 0 0 0 0 0 0 0 0 3458 9 182 21 32 3567 3326 310 259 420

MA0141.2_rc_shift10 (Esrrb_rc) 0.862 0.539 1.334 0.042 0.916 1.412 0.929 4 4 7 6 6 5 5 5.286 5
; positions_6nt_m2 versus MA0141.2_rc (Esrrb_rc); m=5/11; ncol2=12; w=10; offset=4; strand=R; shift=10; score= 5.2857; ----------TGACCTTGrs ; cor=0.862; Ncor=0.539; logoDP=1.334; NIcor=0.042; NsEucl=0.916; SSD=1.412; NSW=0.929; rcor=4; rNcor=4; rlogoDP=7; rNIcor=6; rNsEucl=6; rSSD=5; rNSW=5; rank_mean=5.286; match_rank=5 a 0 0 0 0 0 0 0 0 0 0 26 85 3192 16 29 6 27 51 1702 807 c 0 0 0 0 0 0 0 0 0 0 128 167 243 3622 3597 60 248 630 449 1212 g 0 0 0 0 0 0 0 0 0 0 21 3394 43 11 2 2 32 2653 1230 1212 t 0 0 0 0 0 0 0 0 0 0 3478 9 180 12 33 3590 3347 312 260 403

MA0112.2_rc_shift1 (ESR1_rc) 0.766 0.536 2.155 0.105 0.921 2.422 0.914 10 5 4 3 2 9 7 5.714 6
; positions_6nt_m2 versus MA0112.2_rc (ESR1_rc); m=6/11; ncol2=20; w=14; offset=-5; strand=R; shift=1; score= 5.7143; -rGGtCAgggTGaCCtkgsm ; cor=0.766; Ncor=0.536; logoDP=2.155; NIcor=0.105; NsEucl=0.921; SSD=2.422; NSW=0.914; rcor=10; rNcor=5; rlogoDP=4; rNIcor=3; rNsEucl=2; rSSD=9; rNSW=7; rank_mean=5.714; match_rank=6 a 0 262 61 17 33 6 416 56 83 60 37 24 310 18 43 48 57 93 82 117 c 0 22 2 12 31 426 8 97 53 107 27 53 91 420 387 89 47 65 149 164 g 0 165 353 436 106 22 19 258 276 250 13 394 41 18 8 28 232 229 173 80 t 0 26 59 10 305 21 32 64 63 58 398 4 33 19 36 308 134 83 64 107

MA0258.1_rc_shift0 (ESR2_rc) 0.807 0.484 1.124 -0.035 0.916 2.040 0.915 6 6 8 8 7 8 6 7.000 7
; positions_6nt_m2 versus MA0258.1_rc (ESR2_rc); m=7/11; ncol2=18; w=12; offset=-6; strand=R; shift=0; score= 7; srGGkCAmcsTGACCywg-- ; cor=0.807; Ncor=0.484; logoDP=1.124; NIcor=-0.035; NsEucl=0.916; SSD=2.040; NSW=0.915; rcor=6; rNcor=6; rlogoDP=8; rNIcor=8; rNsEucl=7; rSSD=8; rNSW=6; rank_mean=7.000; match_rank=7 a 67 240 22 53 61 4 279 97 81 72 19 0 292 0 55 2 107 55 0 0 c 136 0 0 2 19 265 24 147 149 113 0 0 33 319 275 154 41 63 0 0 g 94 90 289 268 99 25 33 61 63 123 1 357 19 20 0 15 51 161 0 0 t 60 27 46 34 178 63 21 52 64 49 337 0 13 18 27 186 158 78 0 0

MA0160.1_rc_shift9 (NR4A2_rc) 0.802 0.458 3.369 0.101 0.880 1.850 0.884 7 8 2 4 11 7 11 7.143 8
; positions_6nt_m2 versus MA0160.1_rc (NR4A2_rc); m=8/11; ncol2=8; w=8; offset=3; strand=R; shift=9; score= 7.1429; ---------gTGACCTt--- ; cor=0.802; Ncor=0.458; logoDP=3.369; NIcor=0.101; NsEucl=0.880; SSD=1.850; NSW=0.884; rcor=7; rNcor=8; rlogoDP=2; rNIcor=4; rNsEucl=11; rSSD=7; rNSW=11; rank_mean=7.143; match_rank=8 a 0 0 0 0 0 0 0 0 0 0 0 1 10 0 1 0 1 0 0 0 c 0 0 0 0 0 0 0 0 0 2 0 0 0 11 13 1 3 0 0 0 g 0 0 0 0 0 0 0 0 0 8 0 13 2 0 0 0 1 0 0 0 t 0 0 0 0 0 0 0 0 0 3 14 0 2 3 0 13 8 0 0 0

MA0112.1_rc_shift0 (ESR1_rc) 0.765 0.459 1.844 0.000 0.908 2.452 0.898 11 7 5 7 8 11 8 8.143 9
; positions_6nt_m2 versus MA0112.1_rc (ESR1_rc); m=9/11; ncol2=18; w=12; offset=-6; strand=R; shift=0; score= 8.1429; krGGyCaygGtGACCTgg-- ; cor=0.765; Ncor=0.459; logoDP=1.844; NIcor=0.000; NsEucl=0.908; SSD=2.452; NSW=0.898; rcor=11; rNcor=7; rlogoDP=5; rNIcor=7; rNsEucl=8; rSSD=11; rNSW=8; rank_mean=8.143; match_rank=9 a 1 3 0 1 0 0 6 0 1 0 1 0 9 0 0 0 2 2 0 0 c 1 0 0 0 3 8 1 4 1 1 2 2 0 9 7 1 1 1 0 0 g 4 4 9 8 1 0 1 2 5 7 0 7 0 0 0 1 5 5 0 0 t 3 2 0 0 5 1 1 3 2 1 6 0 0 0 2 7 1 1 0 0

MA0592.1_rc_shift8 (ESRRA_rc) 0.784 0.616 0.359 -0.172 0.900 2.432 0.889 8 2 11 11 9 10 10 8.714 10
; positions_6nt_m2 versus MA0592.1_rc (ESRRA_rc); m=10/11; ncol2=11; w=11; offset=2; strand=R; shift=8; score= 8.7143; --------kgTGACCTTGr- ; cor=0.784; Ncor=0.616; logoDP=0.359; NIcor=-0.172; NsEucl=0.900; SSD=2.432; NSW=0.889; rcor=8; rNcor=2; rlogoDP=11; rNIcor=11; rNsEucl=9; rSSD=10; rNSW=10; rank_mean=8.714; match_rank=10 a 0 0 0 0 0 0 0 0 44 33 0 0 180 1 5 0 0 1 62 0 c 0 0 0 0 0 0 0 0 40 44 10 3 22 207 203 10 6 15 11 0 g 0 0 0 0 0 0 0 0 54 108 1 205 0 0 0 0 2 174 118 0 t 0 0 0 0 0 0 0 0 70 23 197 0 6 0 0 198 200 18 17 0

MA0067.1_rc_shift7 (Pax2_rc) 0.784 0.448 0.410 -0.148 0.885 1.692 0.894 9 10 10 10 10 6 9 9.143 11
; positions_6nt_m2 versus MA0067.1_rc (Pax2_rc); m=11/11; ncol2=8; w=8; offset=1; strand=R; shift=7; score= 9.1429; -------vmrTGAcw----- ; cor=0.784; Ncor=0.448; logoDP=0.410; NIcor=-0.148; NsEucl=0.885; SSD=1.692; NSW=0.894; rcor=9; rNcor=10; rlogoDP=10; rNIcor=10; rNsEucl=10; rSSD=6; rNSW=9; rank_mean=9.143; match_rank=11 a 0 0 0 0 0 0 0 8 10 11 1 2 26 2 9 0 0 0 0 0 c 0 0 0 0 0 0 0 11 19 1 3 1 0 21 5 0 0 0 0 0 g 0 0 0 0 0 0 0 11 0 17 1 28 2 1 7 0 0 0 0 0 t 0 0 0 0 0 0 0 1 2 2 26 0 3 7 10 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
positions_6nt_m2_shift6 (positions_6nt_m2)																	; positions_6nt_m2; m=0 (reference); ncol1=14; shift=6; ncol=20; ------acCATGACCTGGbc ; Alignment reference a 0 0 0 0 0 0 74 45 17 145 0 0 205 0 1 0 11 18 45 42 c 0 0 0 0 0 0 34 61 153 32 0 0 0 204 204 2 1 17 53 61 g 0 0 0 0 0 0 51 50 19 14 0 205 0 0 0 0 163 156 55 51 t 0 0 0 0 0 0 46 49 16 14 205 0 0 1 0 203 30 14 52 51
MA0089.1_shift8 (NFE2L1::MafG)	0.948	0.406	6.304	0.400	0.928	0.371	0.969	1	11	1	1	1	1	1	2.429	1	; positions_6nt_m2 versus MA0089.1 (NFE2L1::MafG); m=1/11; ncol2=6; w=6; offset=2; strand=D; shift=8; score= 2.4286; --------sATGAC------ ; cor=0.948; Ncor=0.406; logoDP=6.304; NIcor=0.400; NsEucl=0.928; SSD=0.371; NSW=0.969; rcor=1; rNcor=11; rlogoDP=1; rNIcor=1; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.429; match_rank=1 a 0 0 0 0 0 0 0 0 7 29 0 1 34 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 11 2 0 0 0 26 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 10 3 0 32 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 0 34 1 0 6 0 0 0 0 0 0
MA0071.1_rc_shift10 (RORA_1_rc)	0.867	0.619	1.095	-0.085	0.918	1.343	0.933	2	1	9	9	3	2	2	4.000	2	; positions_6nt_m2 versus MA0071.1_rc (RORA_1_rc); m=2/11; ncol2=10; w=10; offset=4; strand=R; shift=10; score= 4; ----------TGACCTwgww ; cor=0.867; Ncor=0.619; logoDP=1.095; NIcor=-0.085; NsEucl=0.918; SSD=1.343; NSW=0.933; rcor=2; rNcor=1; rlogoDP=9; rNIcor=9; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=4.000; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0 7 3 15 7 c 0 0 0 0 0 0 0 0 0 0 0 0 0 25 25 4 5 4 0 2 g 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0 0 2 12 1 1 t 0 0 0 0 0 0 0 0 0 0 25 0 0 0 0 21 11 6 9 15
MA0258.2_rc_shift1 (ESR2_rc)	0.853	0.449	2.624	0.342	0.917	1.392	0.930	5	9	3	2	4	3	3	4.143	3	; positions_6nt_m2 versus MA0258.2_rc (ESR2_rc); m=3/11; ncol2=15; w=10; offset=-5; strand=R; shift=1; score= 4.1429; -rGGtCasksTGACCy---- ; cor=0.853; Ncor=0.449; logoDP=2.624; NIcor=0.342; NsEucl=0.917; SSD=1.392; NSW=0.930; rcor=5; rNcor=9; rlogoDP=3; rNIcor=2; rNsEucl=4; rSSD=3; rNSW=3; rank_mean=4.143; match_rank=3 a 0 4095 1278 977 1518 66 5133 1752 1228 801 87 89 7033 41 644 174 0 0 0 0 c 0 606 0 363 1391 6658 533 2173 1688 2738 57 533 989 8143 7170 2563 0 0 0 0 g 0 2708 5854 6469 2056 398 975 2510 3235 4202 1 7621 147 0 0 96 0 0 0 0 t 0 834 1111 434 3278 1121 1602 1808 2092 502 8098 0 74 59 429 5410 0 0 0 0
MA0141.1_rc_shift10 (Esrrb_rc)	0.863	0.539	1.344	0.045	0.916	1.401	0.930	3	3	6	5	5	4	4	4.286	4	; positions_6nt_m2 versus MA0141.1_rc (Esrrb_rc); m=4/11; ncol2=12; w=10; offset=4; strand=R; shift=10; score= 4.2857; ----------TGACCTTGrs ; cor=0.863; Ncor=0.539; logoDP=1.344; NIcor=0.045; NsEucl=0.916; SSD=1.401; NSW=0.930; rcor=3; rNcor=3; rlogoDP=6; rNIcor=5; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=4.286; match_rank=4 a 0 0 0 0 0 0 0 0 0 0 27 85 3175 17 31 27 50 52 1693 805 c 0 0 0 0 0 0 0 0 0 0 129 170 244 3602 3586 60 248 627 448 1209 g 0 0 0 0 0 0 0 0 0 0 20 3376 46 12 5 2 32 2664 1250 1211 t 0 0 0 0 0 0 0 0 0 0 3458 9 182 21 32 3567 3326 310 259 420
MA0141.2_rc_shift10 (Esrrb_rc)	0.862	0.539	1.334	0.042	0.916	1.412	0.929	4	4	7	6	6	5	5	5.286	5	; positions_6nt_m2 versus MA0141.2_rc (Esrrb_rc); m=5/11; ncol2=12; w=10; offset=4; strand=R; shift=10; score= 5.2857; ----------TGACCTTGrs ; cor=0.862; Ncor=0.539; logoDP=1.334; NIcor=0.042; NsEucl=0.916; SSD=1.412; NSW=0.929; rcor=4; rNcor=4; rlogoDP=7; rNIcor=6; rNsEucl=6; rSSD=5; rNSW=5; rank_mean=5.286; match_rank=5 a 0 0 0 0 0 0 0 0 0 0 26 85 3192 16 29 6 27 51 1702 807 c 0 0 0 0 0 0 0 0 0 0 128 167 243 3622 3597 60 248 630 449 1212 g 0 0 0 0 0 0 0 0 0 0 21 3394 43 11 2 2 32 2653 1230 1212 t 0 0 0 0 0 0 0 0 0 0 3478 9 180 12 33 3590 3347 312 260 403
MA0112.2_rc_shift1 (ESR1_rc)	0.766	0.536	2.155	0.105	0.921	2.422	0.914	10	5	4	3	2	9	7	5.714	6	; positions_6nt_m2 versus MA0112.2_rc (ESR1_rc); m=6/11; ncol2=20; w=14; offset=-5; strand=R; shift=1; score= 5.7143; -rGGtCAgggTGaCCtkgsm ; cor=0.766; Ncor=0.536; logoDP=2.155; NIcor=0.105; NsEucl=0.921; SSD=2.422; NSW=0.914; rcor=10; rNcor=5; rlogoDP=4; rNIcor=3; rNsEucl=2; rSSD=9; rNSW=7; rank_mean=5.714; match_rank=6 a 0 262 61 17 33 6 416 56 83 60 37 24 310 18 43 48 57 93 82 117 c 0 22 2 12 31 426 8 97 53 107 27 53 91 420 387 89 47 65 149 164 g 0 165 353 436 106 22 19 258 276 250 13 394 41 18 8 28 232 229 173 80 t 0 26 59 10 305 21 32 64 63 58 398 4 33 19 36 308 134 83 64 107
MA0258.1_rc_shift0 (ESR2_rc)	0.807	0.484	1.124	-0.035	0.916	2.040	0.915	6	6	8	8	7	8	6	7.000	7	; positions_6nt_m2 versus MA0258.1_rc (ESR2_rc); m=7/11; ncol2=18; w=12; offset=-6; strand=R; shift=0; score= 7; srGGkCAmcsTGACCywg-- ; cor=0.807; Ncor=0.484; logoDP=1.124; NIcor=-0.035; NsEucl=0.916; SSD=2.040; NSW=0.915; rcor=6; rNcor=6; rlogoDP=8; rNIcor=8; rNsEucl=7; rSSD=8; rNSW=6; rank_mean=7.000; match_rank=7 a 67 240 22 53 61 4 279 97 81 72 19 0 292 0 55 2 107 55 0 0 c 136 0 0 2 19 265 24 147 149 113 0 0 33 319 275 154 41 63 0 0 g 94 90 289 268 99 25 33 61 63 123 1 357 19 20 0 15 51 161 0 0 t 60 27 46 34 178 63 21 52 64 49 337 0 13 18 27 186 158 78 0 0
MA0160.1_rc_shift9 (NR4A2_rc)	0.802	0.458	3.369	0.101	0.880	1.850	0.884	7	8	2	4	11	7	11	7.143	8	; positions_6nt_m2 versus MA0160.1_rc (NR4A2_rc); m=8/11; ncol2=8; w=8; offset=3; strand=R; shift=9; score= 7.1429; ---------gTGACCTt--- ; cor=0.802; Ncor=0.458; logoDP=3.369; NIcor=0.101; NsEucl=0.880; SSD=1.850; NSW=0.884; rcor=7; rNcor=8; rlogoDP=2; rNIcor=4; rNsEucl=11; rSSD=7; rNSW=11; rank_mean=7.143; match_rank=8 a 0 0 0 0 0 0 0 0 0 0 0 1 10 0 1 0 1 0 0 0 c 0 0 0 0 0 0 0 0 0 2 0 0 0 11 13 1 3 0 0 0 g 0 0 0 0 0 0 0 0 0 8 0 13 2 0 0 0 1 0 0 0 t 0 0 0 0 0 0 0 0 0 3 14 0 2 3 0 13 8 0 0 0
MA0112.1_rc_shift0 (ESR1_rc)	0.765	0.459	1.844	0.000	0.908	2.452	0.898	11	7	5	7	8	11	8	8.143	9	; positions_6nt_m2 versus MA0112.1_rc (ESR1_rc); m=9/11; ncol2=18; w=12; offset=-6; strand=R; shift=0; score= 8.1429; krGGyCaygGtGACCTgg-- ; cor=0.765; Ncor=0.459; logoDP=1.844; NIcor=0.000; NsEucl=0.908; SSD=2.452; NSW=0.898; rcor=11; rNcor=7; rlogoDP=5; rNIcor=7; rNsEucl=8; rSSD=11; rNSW=8; rank_mean=8.143; match_rank=9 a 1 3 0 1 0 0 6 0 1 0 1 0 9 0 0 0 2 2 0 0 c 1 0 0 0 3 8 1 4 1 1 2 2 0 9 7 1 1 1 0 0 g 4 4 9 8 1 0 1 2 5 7 0 7 0 0 0 1 5 5 0 0 t 3 2 0 0 5 1 1 3 2 1 6 0 0 0 2 7 1 1 0 0
MA0592.1_rc_shift8 (ESRRA_rc)	0.784	0.616	0.359	-0.172	0.900	2.432	0.889	8	2	11	11	9	10	10	8.714	10	; positions_6nt_m2 versus MA0592.1_rc (ESRRA_rc); m=10/11; ncol2=11; w=11; offset=2; strand=R; shift=8; score= 8.7143; --------kgTGACCTTGr- ; cor=0.784; Ncor=0.616; logoDP=0.359; NIcor=-0.172; NsEucl=0.900; SSD=2.432; NSW=0.889; rcor=8; rNcor=2; rlogoDP=11; rNIcor=11; rNsEucl=9; rSSD=10; rNSW=10; rank_mean=8.714; match_rank=10 a 0 0 0 0 0 0 0 0 44 33 0 0 180 1 5 0 0 1 62 0 c 0 0 0 0 0 0 0 0 40 44 10 3 22 207 203 10 6 15 11 0 g 0 0 0 0 0 0 0 0 54 108 1 205 0 0 0 0 2 174 118 0 t 0 0 0 0 0 0 0 0 70 23 197 0 6 0 0 198 200 18 17 0
MA0067.1_rc_shift7 (Pax2_rc)	0.784	0.448	0.410	-0.148	0.885	1.692	0.894	9	10	10	10	10	6	9	9.143	11	; positions_6nt_m2 versus MA0067.1_rc (Pax2_rc); m=11/11; ncol2=8; w=8; offset=1; strand=R; shift=7; score= 9.1429; -------vmrTGAcw----- ; cor=0.784; Ncor=0.448; logoDP=0.410; NIcor=-0.148; NsEucl=0.885; SSD=1.692; NSW=0.894; rcor=9; rNcor=10; rlogoDP=10; rNIcor=10; rNsEucl=10; rSSD=6; rNSW=9; rank_mean=9.143; match_rank=11 a 0 0 0 0 0 0 0 8 10 11 1 2 26 2 9 0 0 0 0 0 c 0 0 0 0 0 0 0 11 19 1 3 1 0 21 5 0 0 0 0 0 g 0 0 0 0 0 0 0 11 0 17 1 28 2 1 7 0 0 0 0 0 t 0 0 0 0 0 0 0 1 2 2 26 0 3 7 10 0 0 0 0 0