/vh/rsat/rsat/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Input files
	file2 	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	15 matrices	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	16	1378	sssgCCGCCCCGCCss
		file1	2	22	619	ssgGCCGCCCCvGGGCaGggss
		file1	3	11	522	ssAGGGAGCcg
		file1	4	24	1224	sssssscgCGCCCCGCCCvsssss
		file1	5	24	653	sssccvGCCCCGCCCCvGggCsss
		file1	6	14	1267	csGCCCCaGGgcss
		file1	7	11	241	skCCTCAGGys
		file1	8	13	2032	ssCcCCGCCCCss
		file1	9	12	76	ssGmGGGmGGcG
		file1	10	12	102	CrCACACACACr
		file1	11	24	207	ssCtGCCCtssGGCCaggGCCcsg
		...	5 more matrices
	file2	15 matrices	$RSAT/public_html/tmp/apache/2014/10/07/peak-motifs.2014-10-07.150329_2014-10-07.150329_sPZtpE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		16		1378		sssgCCGCCCCGCCss
		file2		2		22		619		ssgGCCGCCCCvGGGCaGggss
		file2		3		11		522		ssAGGGAGCcg
		file2		4		24		1224		sssssscgCGCCCCGCCCvsssss
		file2		5		24		653		sssccvGCCCCGCCCCvGggCsss
		file2		6		14		1267		csGCCCCaGGgcss
		file2		7		11		241		skCCTCAGGys
		file2		8		13		2032		ssCcCCGCCCCss
		file2		9		12		76		ssGmGGGmGGcG
		file2		10		12		102		CrCACACACACr
		file2		11		24		207		ssCtGCCCtssGGCCaggGCCcsg
		...	5 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
dyads_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 dyads_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.926 0.708 2.581 0.689 0.977 0.5928 0.95812 17 13 13 17 0.7647 0.7647 1.0000 D 1 .sgCCCCGCCCCGC... ssCcCCGCCCCss 2 3 5 2 4 2 2 2.8571 1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.902 0.574 2.904 0.554 0.970 0.8464 0.95353 22 14 14 22 0.6364 0.6364 1.0000 D 4 ....CCGCCCCvGGGCaG.... csGCCCCaGGgcss 4 11 3 7 8 5 4 6.0000 2
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 0.921 0.537 2.756 0.521 0.976 0.6713 0.95862 24 14 14 24 0.5833 0.5833 1.0000 D 9 .........CCGCCCCvGggCss. csGCCCCaGGgcss 3 16 4 13 3 3 3 6.4286 3
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 0.930 0.504 2.461 0.497 0.979 0.5360 0.96018 24 13 13 24 0.5417 0.5417 1.0000 D 5 .....vGCCCCGCCCCvG...... ssCcCCGCCCCss 1 17 8 15 2 1 1 6.4286 4
dyads_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.858 0.807 2.369 0.773 0.961 1.2522 0.95055 17 16 16 17 0.9412 0.9412 1.0000 D 1 .sgCCCCGCCCCGCCss sssgCCGCCCCGCCss 8 1 10 1 12 9 9 7.1429 5
dyads_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 dyads_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 0.867 0.614 1.941 0.588 0.966 1.1651 0.95510 17 24 17 24 0.7083 1.0000 0.7083 D -2 ssgCCCCGCCCCGCCss ..sssscgCGCCCCGCCCv..... 6 8 18 6 6 7 7 8.2857 6
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 0.866 0.577 2.009 0.549 0.965 1.1191 0.95325 16 24 16 24 0.6667 1.0000 0.6667 D 0 sssgCCGCCCCGCCss sssccvGCCCCGCCCC........ 7 9 16 8 9 6 8 9.0000 7
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 0.894 0.484 2.101 0.463 0.969 0.8015 0.95130 24 13 13 24 0.5417 0.5417 1.0000 D 8 ........CGCCCCGCCCvss... ssCcCCGCCCCss 5 19 14 17 11 4 6 10.8571 8
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 0.835 0.678 2.544 0.639 0.951 1.2775 0.93852 16 13 13 16 0.8125 0.8125 1.0000 D 0 sssgCCGCCCCGC... ssCcCCGCCCCss 10 4 7 4 22 10 19 10.8571 9
dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m5 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m5 0.826 0.570 1.146 0.480 0.970 1.2098 0.96111 20 29 20 29 0.6897 1.0000 0.6897 D -1 ssGGCssssssssssCCCss .scvGssssssssssssssss........ 12 12 25 16 1 8 5 11.2857 10
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 0.815 0.634 2.067 0.599 0.956 1.8604 0.95407 24 24 21 27 0.7778 0.8750 0.8750 D 3 ...ssscgCGCCCCGCCCvsssss sssccvGCCCCGCCCCvGggC... 15 6 15 5 7 22 12 11.7143 11
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 0.817 0.575 2.375 0.548 0.953 1.7741 0.95043 22 24 19 27 0.7037 0.8636 0.7917 D -5 ssgGCCGCCCCvGGGCaGg... .....vGCCCCGCCCCvGggCsss 14 10 9 9 13 21 14 12.8571 12
dyads_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.850 0.496 3.212 0.419 0.953 1.3215 0.94194 24 14 14 24 0.5833 0.5833 1.0000 R 2 ..CtGCCCtssGGCCa........ SSGCCCTGGGGCSG 9 18 2 21 18 12 16 13.7143 13
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.830 0.554 1.949 0.517 0.956 1.3953 0.94780 16 24 16 24 0.6667 1.0000 0.6667 D -3 sssgCCGCCCCGCCss ...ssscgCGCCCCGCCCv..... 11 14 17 14 15 15 10 13.7143 14
dyads_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 dyads_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 0.773 0.644 1.421 0.545 0.953 1.8755 0.95158 20 24 20 24 0.8333 1.0000 0.8333 D 0 ssGGCssssssssssCCCss sssssscgCGCCCCGCCCvs.... 24 5 20 10 10 23 15 15.2857 15
dyads_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 0.779 0.727 3.541 0.684 0.933 1.8789 0.93077 15 14 14 15 0.9333 0.9333 1.0000 D 0 ssGCCbsvsGCCts. csGCCCCaGGgcss 23 2 1 3 27 24 28 15.4286 16
dyads_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 dyads_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 0.765 0.633 1.286 0.524 0.956 2.0951 0.95735 29 24 24 29 0.8276 0.8276 1.0000 D 4 ....Gsssssssssssssssscssggcs. sssssscgCGCCCCGCCCvsssss 25 7 22 12 5 29 11 15.8571 17
dyads_test_vs_ctrl_m3 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m3 dyads_test_vs_ctrl_m4 0.821 0.547 1.293 0.317 0.953 1.3218 0.94193 15 20 14 21 0.6667 0.9333 0.7000 R -6 ssGCCbsvsGCCts. ......SSSSSSSSSGCCSS 13 15 21 26 19 13 17 17.7143 18
dyads_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 dyads_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 0.794 0.562 2.277 0.530 0.943 1.9495 0.94192 17 24 17 24 0.7083 1.0000 0.7083 D -4 ssgCCCCGCCCCGCCss ....cvGCCCCGCCCCvGggC... 20 13 12 11 20 26 23 17.8571 19
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.812 0.480 2.132 0.456 0.947 1.3860 0.93596 22 13 13 22 0.5909 0.5909 1.0000 D 0 ssgGCCGCCCCvG......... ssCcCCGCCCCss 16 20 13 18 23 14 21 17.8571 20
dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m4 0.787 0.407 1.506 0.391 0.952 1.4288 0.94365 24 20 15 29 0.5172 0.6250 0.7500 D 9 .........ssGGCCaggGCCcsg ssGGCssssssssss..... 22 28 19 23 17 17 18 20.5714 21
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 0.804 0.402 2.545 0.380 0.927 1.3100 0.91007 14 13 9 18 0.5000 0.6429 0.6923 D -4 csGCCCCaG..... ....CCGCCCCss 18 29 6 25 29 11 29 21.0000 22
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 0.811 0.433 0.744 0.027 0.953 1.4933 0.94599 22 24 16 30 0.5333 0.7273 0.6667 R 6 ......GCCCCvGGGCaGggss SSSSSBGGGCGGGGCG........ 17 25 29 29 16 19 13 21.1429 23
dyads_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 dyads_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 0.798 0.456 1.269 0.435 0.941 1.4186 0.92982 20 13 12 21 0.5714 0.6000 0.9231 D 8 ........sssssssCCCss ssCcCCGCCCCs. 19 23 23 20 28 16 25 22.0000 24
dyads_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 dyads_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 0.759 0.474 2.337 0.437 0.937 1.9040 0.93495 15 24 15 24 0.6250 1.0000 0.6250 D -9 ssGCCbsvsGCCtss .........CCGCCCCvGggCsss 28 21 11 19 24 25 27 22.1429 25
dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m4 0.789 0.427 1.187 0.419 0.943 1.4693 0.93407 17 20 13 24 0.5417 0.7647 0.6500 D -7 ssgCCCCGCCCCG.... .......ssssssssCCCss 21 27 24 22 25 18 22 22.7143 26
dyads_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 dyads_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 0.763 0.463 1.005 0.225 0.948 2.0864 0.94893 29 24 20 33 0.6061 0.6897 0.8333 R 9 .........sssssssssssscssggcss SSSGCCCBGGGGCGGGGCBG.... 26 22 27 27 14 28 20 23.4286 27
dyads_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.761 0.430 1.116 0.389 0.938 1.6126 0.93093 20 16 13 23 0.5652 0.6500 0.8125 D 7 .......ssssssssCCCss sssgCCGCCCCGC... 27 26 26 24 26 20 26 25.0000 28
dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m5 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m5 0.756 0.443 0.995 0.205 0.942 1.9668 0.94167 17 29 17 29 0.5862 1.0000 0.5862 R 0 ssgCCCCGCCCCGCCss SSGCCSSGSSSSSSSSS............ 29 24 28 28 21 27 24 25.8571 29 
 Host name	biow
 Job started	2014-10-07.150809
 Job done	2014-10-07.150823
 Seconds	2.26
	user	2.26
	system	0.24
	cuser	10.9
;	csystem	1.24